Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00054 ATGATTAAACTATTTAAAGTAAAGGAAAAACAGAGGGAACTTGCAGAGAATGCAAGTGGTGGAGCACCAATTAAGAAGCAAACTGCTGGGGAGTTGCGTCTGCACAAAGATATAAGTGAGCTGAATCTACCAAAATCTTGTGCCATGCATTTCCCCAATGGTAAAGATGACCTGATGAACTTTGAAGTTTCAATTCGGCCTGATGAAGGATATTATATGGGTGGTACATTTTTGTTTTCCTTCCAAGTGTCTCCCATCTATCCTCATGAGGCACCAAAAGTCAAGTGCAAGACAAAGGTCTACCATCCTAATATCGACTTGGAAGGAAATGTTTGCCTCAACATCTTGCGAGAAGATTGGAAACCTGTTCTGAATATAAACACAGTCATTTATGGATTGTATCATCTTTTCACGGAGCCAAATTATGAGGACCCTCTCAATCATGATGCGGCGGCAGTTTTGAGAGAGAATCCCAAATTGTTCGAGTCTAATGTAAGGAGGGCTATGGCTGGTGGATACGTGGGGCAAATCTTTTTCCCTCGCTGTATGTAA 552 0.4149 MIKLFKVKEKQRELAENASGGAPIKKQTAGELRLHKDISELNLPKSCAMHFPNGKDDLMNFEVSIRPDEGYYMGGTFLFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNYEDPLNHDAAAVLRENPKLFESNVRRAMAGGYVGQIFFPRCM 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00054 183 Pfam Ubiquitin-conjugating enzyme 33 168 IPR000608 -
Accr10g00054 183 SMART ubc_7 32 174 - -
Accr10g00054 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 101 116 IPR023313 -
Accr10g00054 183 SUPERFAMILY UBC-like 24 181 IPR016135 -
Accr10g00054 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 29 174 IPR000608 -
Accr10g00054 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 57 160 - -
Accr10g00054 183 Gene3D Ubiquitin Conjugating Enzyme 25 183 IPR016135 -
Accr10g00054 183 CDD UBCc 33 167 IPR000608 -
Accr10g00054 183 FunFam NEDD8-conjugating enzyme Ubc12 25 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00054 Accr-Chr10 709585 712060 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00054 K10579 - gmx:100813186 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr10g00054 10 709585 712060 Accr10g00054 10 709585 712060 ECH