Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00018 ATGGATCTAGTAGCTTCACACTTATCTCCAACTCTTCCCAGAAAGAAATTTCCTTCTCAAACTCTACTTCCTGGACTTGTCTCTAGAAGTATATGCCTTCAAAACCCACTTGAATTTTCATCCCAATTTTTCACTTTTATAAATAGGAATGGTCATTTTGAAGCATGTGCCCGTAAAAAAGCAAGGGTGAGCGAACTAGAGTATAGCAGAGAAGTCGAAGAAGCAGAGGAACCACACACGACTTCTTCTTTGGACGATGACTCGTCTTTCTTGTCTCTCAGCGAGAAACCTGACAGGAATTTGGCTTTGTTGGACGATTATGAGGCGGAGGAGCTTGATTATGATTCCCACCCTGACCATCAAAGCGGATATGTGGCTTTACTTGGGAAGCCAAATGTCGGGAAGAGTACACTGGCAAACCAAATGATTGGTCAAAAGTTGTCTATAGTTACACAGAAACCTCAAACAACAAGACACCGTATTCTTGGTATATGTTCTGGCTCAGATTATCAGATAATACTTTACGATACACCTGGTGTTCTCAAGAAGGAAATGCACATGTTGGACTCAATGATGATGAAGAATGTTCGCAGTGCTGCAGTTAATGCTGATTGTGTTTTAATTCTTGTTGATGCGTGTAAAGTTCCTGAAAATATTGATGAAGTGTTGAAGGAAGGCGTAGGAGATCTCCAGGATAAGCCTCCCACTCTACTCATTCTTAATAAGAAGGATCTTATCAAACCTGGGGAAATTGCAAAGAAACTTGAGTGGTATCAGAAATACACTGATGTTGATGAGGTTATACCAGTTAGTGCTAAATATGGCCATGGTATTGAAGATGTCAAGGACTGGATATTGTCAAAGCTTCCCAATGGACCAGCATACTATCCAAAGGACATTGTCAGTGAGCACCCAGAAAGATTTTTTGTGGGTGAAATCATTCGAGAAAAGATCTTTATGCAGTACCGAAATGAAATACCCTATTCTTGCCAGGTGAATGTTGTAAGCTACAAGGCTCGGCCCAATGCAAAGTATTTCATACAAGTGGAGATTGTTGTTGAAAAAAATTCTCAGAAGATTATACTTATTGGAAGAGAGGGAAAGGCTTTGAAACTTCTTGCAACAGCTGCCCGTCTGGACATTGAAGACTTCCTGCAGAAGAAAGTTTATCTTGAGATTGAAGTGAAGGTGAGAGAAAATTGGCGACAAGATGAAGGGCTTCTCAAGAACTATGGATATGGGGGCCAGATACGAGTTCTGTAA 1263 0.407 MDLVASHLSPTLPRKKFPSQTLLPGLVSRSICLQNPLEFSSQFFTFINRNGHFEACARKKARVSELEYSREVEEAEEPHTTSSLDDDSSFLSLSEKPDRNLALLDDYEAEELDYDSHPDHQSGYVALLGKPNVGKSTLANQMIGQKLSIVTQKPQTTRHRILGICSGSDYQIILYDTPGVLKKEMHMLDSMMMKNVRSAAVNADCVLILVDACKVPENIDEVLKEGVGDLQDKPPTLLILNKKDLIKPGEIAKKLEWYQKYTDVDEVIPVSAKYGHGIEDVKDWILSKLPNGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEIPYSCQVNVVSYKARPNAKYFIQVEIVVEKNSQKIILIGREGKALKLLATAARLDIEDFLQKKVYLEIEVKVRENWRQDEGLLKNYGYGGQIRVL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00018 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 323 IPR027417 -
Accr10g00018 420 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 121 291 IPR030388 GO:0005525
Accr10g00018 420 Gene3D - 303 417 IPR015946 -
Accr10g00018 420 NCBIfam GTPase Era 123 396 IPR005662 GO:0003723|GO:0005525
Accr10g00018 420 Gene3D - 118 302 IPR027417 -
Accr10g00018 420 Pfam KH domain 325 402 IPR004044 GO:0003723
Accr10g00018 420 FunFam GTPase Era 302 416 - -
Accr10g00018 420 Pfam 50S ribosome-binding GTPase 125 242 IPR006073 GO:0005525
Accr10g00018 420 PANTHER GTPASE ERA 67 405 IPR005662 GO:0003723|GO:0005525
Accr10g00018 420 Hamap GTPase Era [era]. 120 413 IPR005662 GO:0003723|GO:0005525
Accr10g00018 420 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 298 413 IPR009019 GO:0003723
Accr10g00018 420 CDD Era 120 289 IPR030388 GO:0005525
Accr10g00018 420 FunFam GTPase Era 118 301 - -
Accr10g00018 420 CDD KH-II_Era 312 397 - -
Accr10g00018 420 NCBIfam small GTP-binding protein domain 125 284 IPR005225 GO:0005525
Accr10g00018 420 MobiDBLite consensus disorder prediction 70 90 - -
Accr10g00018 420 ProSiteProfiles Type-2 KH domain profile. 322 399 IPR004044 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00018 Accr-Chr10 275486 280054 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00018 K03595 - gmx:100815820 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr10g00018 10 275486 280054 Accr10g00018 10 275486 280054 ECH