Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g1308 ATGTCCAGGCTGCTTCGTAAAGCTTACCTTCTCAGGAGCTCTCTTTTCGGCCATGACGTTAAAACAATGGGATTTAGACATGGATTATTGGGCACATCGCAAATTTTAAGCTTCTCAACTCGAGGTAAAAAGGGGTCAAAATCAGATGGAAGTGATTCGTGTGAAGAAAATACATCTAAGAAAGAGTTGGCCATACAAAAAACCCTGGATCAGATCACTTCTGCACATGGAAAGGGAACTATCATGTGGCTTGGTCGCTCTGCCTCTGGAAAACATGAACCTGTAGCTGTAGTGTCAACTGGTTCTTTTGCTCTCGATATGGCACTAGGAGTTGGTGGATTTCCAAAGGGACGTGTTGTGGAAATATTTGGGCCAGAGGCTTCTGGGAAAACTACTCTTGCCTTACATGTGATTGCAGAAGCGCAGAAGCAAGGAGGTTATTGTGCTTTTATTGATGCTGAGCATTCACTTGATAAAAAACTCGCGGGAGCTATTGGTGTAAATACTCAGAAATTGCTTCTCGCTCAACCTGAATGTGGTGAACTAGCACTTAGTCTTGTTGATGCCTTAATTCAAAGTGATTCACTTGATGTAATTGTTGTTGACAGTGTAGCTGCTCTTGTTCCTAAAGGCGAGCTTGATGGTGAAATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAAGCACTTCGAAAATTTTGCCACTCTTTATCAAAGTCCAACTGTATATTGATTTTTACAAACCAGGTGAGGTCAAAGCTTTCTACTTTTGGGGGGTTTGGCGGGCCAATGGATGTTACTTGTGGTGGTAATGCATTGAAATTCTATGCTTCAGTGCGGCTAAATATCAAGCGAATAGGATTTGTTAAGAAGGGAGAAGAGGCTATAGGAAGCCAGATCCTTGTGAAGGTTGTGAAGAACAAGCTTGCTCCTCCATTTAAAACTGCACAGTTTGAGCTTGAGTTTGGAAAGGGCATATGTAGAGAAGCAGAGGTCTTAGATTTGAGCCTAAAACACAAATTCATATCCAAGTCTGGTTCATTTTACAACTACAAGGGCAAGAACTTCCATGGCAAGGATGCTCTTAAGAAGTTCCTGGCTAGTAACCCTAGTGTTCAAGAAGAACTTATTCTGAAGCTGAGGGAAAAGCTTCTTACTGCTGATAAAGAAGCAGAGGTAACTGATGAAGATGAAGTTGTATCACCTTATTCTTCTGATGAAGAAGCTGCTGCTATGGCTGCTGCAGAAGTATGA 1263 0.4236 MSRLLRKAYLLRSSLFGHDVKTMGFRHGLLGTSQILSFSTRGKKGSKSDGSDSCEENTSKKELAIQKTLDQITSAHGKGTIMWLGRSASGKHEPVAVVSTGSFALDMALGVGGFPKGRVVEIFGPEASGKTTLALHVIAEAQKQGGYCAFIDAEHSLDKKLAGAIGVNTQKLLLAQPECGELALSLVDALIQSDSLDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKFCHSLSKSNCILIFTNQVRSKLSTFGGFGGPMDVTCGGNALKFYASVRLNIKRIGFVKKGEEAIGSQILVKVVKNKLAPPFKTAQFELEFGKGICREAEVLDLSLKHKFISKSGSFYNYKGKNFHGKDALKKFLASNPSVQEELILKLREKLLTADKEAEVTDEDEVVSPYSSDEEAAAMAAAEV 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g1308 420 SMART AAA_5 116 290 IPR003593 GO:0016887
Acco13g1308 420 NCBIfam recombinase RecA 61 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Acco13g1308 420 SUPERFAMILY RecA protein, C-terminal domain 331 386 IPR023400 -
Acco13g1308 420 MobiDBLite consensus disorder prediction 45 59 - -
Acco13g1308 420 ProSiteProfiles RecA family profile 1. 94 253 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Acco13g1308 420 PRINTS RecA protein signature 358 375 IPR013765 GO:0003697|GO:0005524|GO:0006281
Acco13g1308 420 PRINTS RecA protein signature 186 215 IPR013765 GO:0003697|GO:0005524|GO:0006281
Acco13g1308 420 PRINTS RecA protein signature 305 334 IPR013765 GO:0003697|GO:0005524|GO:0006281
Acco13g1308 420 PRINTS RecA protein signature 224 253 IPR013765 GO:0003697|GO:0005524|GO:0006281
Acco13g1308 420 PRINTS RecA protein signature 152 181 IPR013765 GO:0003697|GO:0005524|GO:0006281
Acco13g1308 420 PRINTS RecA protein signature 272 300 IPR013765 GO:0003697|GO:0005524|GO:0006281
Acco13g1308 420 FunFam Recombinase RecA 92 391 - -
Acco13g1308 420 Gene3D - 93 398 IPR027417 -
Acco13g1308 420 ProSitePatterns recA signature. 275 283 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Acco13g1308 420 ProSiteProfiles RecA family profile 2. 263 334 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Acco13g1308 420 MobiDBLite consensus disorder prediction 398 420 - -
Acco13g1308 420 CDD RecA 95 331 IPR013765 GO:0003697|GO:0005524|GO:0006281
Acco13g1308 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 329 IPR027417 -
Acco13g1308 420 PANTHER RECA 38 401 IPR013765 GO:0003697|GO:0005524|GO:0006281
Acco13g1308 420 MobiDBLite consensus disorder prediction 40 59 - -
Acco13g1308 420 Pfam recA bacterial DNA recombination protein 64 329 IPR013765 GO:0003697|GO:0005524|GO:0006281
Acco13g1308 420 Hamap Protein RecA [recA]. 61 390 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g1308 Acco-ChrAcco13 12214043 12218970 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco13g1308 13 12214043 12218970 Acco13g1308 13 12214043 12218970 ECH