Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0833 ATGTCGTCAAAGCATCTCCAAGTGGATCAGCTTAAACAACTAAGGGAAGTTTTTGTTCGATTTGACATGGACTCCGACGGCAGCCTGACCGTCCTAGAGCTAGCAGCGCTCCTCCGCTCGCTTGGCCTGAAGCCCACCGGAGATCAAATCCACACGCTGTTAGCCACCATGGACTCCAACGGCAATGGATCGGTGGAATTCGATGAACTGGTGAAAGCGATGCTGCCAGACTTGAAGAAAGAAGAGGTAACGATGAATCAAGAGAAGCTTCTAGAGGTTTTCAAGTGCTTCGACCGCGACGGAAATGGGTACATATCCGCGGCAGAGTTGGCCAGAGCAATGGCCAGAATGGGTCAACCTCTTACGTACAGAGAGCTCACACAGATGATCAAAGATGCTGATGAAGATGGCGATGGTGTTATTAGCTTCAGTGAGTTTGCCAATGTAATGGCCAAATCTGCTTCTGATTTCTTTGACCTTGCTTCGACATGA 492 0.4919 MSSKHLQVDQLKQLREVFVRFDMDSDGSLTVLELAALLRSLGLKPTGDQIHTLLATMDSNGNGSVEFDELVKAMLPDLKKEEVTMNQEKLLEVFKCFDRDGNGYISAAELARAMARMGQPLTYRELTQMIKDADEDGDGVISFSEFANVMAKSASDFFDLAST 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0833 163 Gene3D - 1 82 - -
Acco13g0833 163 FunFam probable calcium-binding protein CML18 81 157 - -
Acco13g0833 163 Pfam EF-hand domain pair 12 74 IPR002048 GO:0005509
Acco13g0833 163 Pfam EF-hand domain pair 88 150 IPR002048 GO:0005509
Acco13g0833 163 CDD EFh 13 74 IPR002048 GO:0005509
Acco13g0833 163 ProSitePatterns EF-hand calcium-binding domain. 58 70 IPR018247 -
Acco13g0833 163 ProSiteProfiles EF-hand calcium-binding domain profile. 45 80 IPR002048 GO:0005509
Acco13g0833 163 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Acco13g0833 163 SMART efh_1 13 41 IPR002048 GO:0005509
Acco13g0833 163 SMART efh_1 89 117 IPR002048 GO:0005509
Acco13g0833 163 SMART efh_1 49 77 IPR002048 GO:0005509
Acco13g0833 163 SMART efh_1 125 153 IPR002048 GO:0005509
Acco13g0833 163 SUPERFAMILY EF-hand 5 152 IPR011992 -
Acco13g0833 163 ProSitePatterns EF-hand calcium-binding domain. 22 34 IPR018247 -
Acco13g0833 163 ProSitePatterns EF-hand calcium-binding domain. 134 146 IPR018247 -
Acco13g0833 163 ProSiteProfiles EF-hand calcium-binding domain profile. 85 120 IPR002048 GO:0005509
Acco13g0833 163 ProSiteProfiles EF-hand calcium-binding domain profile. 121 156 IPR002048 GO:0005509
Acco13g0833 163 PANTHER CALCIUM BINDING PROTEIN 83 150 - -
Acco13g0833 163 ProSitePatterns EF-hand calcium-binding domain. 98 110 IPR018247 -
Acco13g0833 163 FunFam Probable calcium-binding protein CML15 1 79 - -
Acco13g0833 163 CDD EFh 89 151 IPR002048 GO:0005509
Acco13g0833 163 Gene3D - 83 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0833 Acco-ChrAcco13 6326433 6326924 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco13g0833 9 160 EF-hand Containing Proteins AT1G18530 75.658 2.15e-83 241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco13g0833 13 6326433 6326924 Acco13g0833 13 6326433 6326924 ECH