Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0549 ATGGGTGGATCCATTTCAAAACGGTGTCGTGGGAGGCAGCATTCGTATTCAAGGGCCAGTTCACATTCTTGTACTTACCCTCCGCCTCAATCGCCCTACGTGTCAGAACGCCATCATTTGCCTCAGGAATATTACGGGGCTCCATCTCAAACCTATGGTGGTGGTCGTGCACCTGAATCAAACAAGAGGTTGGAGAGGAAGTATTCAAAGATTGATGATAACTATGTTAGCTTGGACCAGGTAACGGAGGCTTTAGCAGGTGCTGGTTTAGAGTCTTCCAATCTGATTGTTGGTATTGACTTCACAAAGAGCAATGAGTGGACAGGTGGAAGATCATTCCAAAGGAGATGCCTGCATCATATTGGTCTTGAACAAAATCCGTATGAACAAGCAATATCAATCATTGGAAAAACATTGTCTTCCTTTGATGAGGATAACTTGATTCCCTGTTTTGGATTTGGAGATGCATCAACCCATGACCAGGAAGTTTTTAGTTTTTATCCGGATGAGAGATTTTGTCAAGGGTTTGAAGAAGTGTTGAGTCGGTACCGGGAATTGGTTCCTCAATTAAAGCTTGCAGGGCCAACATCATTTGCCCCGGTCATTGAAATGGCAATCACTATAGTTGAGCAAAGTGGTGGCCAATACCATGTCTTATTGATAATAGCAGACGGACAGGTGACAAGAAGTGTTGATACTGAGGGAGGGCAGCTAAGCACTCAGGAAAAACAAACTGTTGAAGCTATTGTGAAAGCAAGTGAATATCCCCTGTCAATCATATTAGTTGGAGTTGGAGATGGACCATGGGACATGATGAAAGAATTTGATGATAACATACCAGCTCGAGTCTTTGACAATTTCCAGTTTGTGAATTTTACTGAAATAATGTCAAAGAACATGGATAGATCCCGAAAAGAAACAGAATTTGCACTTGCTGCGCTGATGGAAATCCCCTCTCAGTACAAGGCAACATTGGAACTTAATATACTGGGTGCTCGTAGAGGGAAAGCTATAGACAGGGTTTCTCTTCCTCCTCCTCTGTATGGTGCTGCTGCATCTCTGAATGCCCTGGCCCCAAAATCTTCTCGTTCAACCAGTTTTCATCCTAGTGCACCATCTTACAGTGACAGACATTATAATACTGACGCAAATCGTCCTGCAAGTTCTGCTTCTGATAATCATGTTTGTCCAATTTGCCTCTGTGAACCTAAGAATATGGCCTTTGGTTGCGGCCATCAGACTTGCTGTGAGTGCGGTCAGGATCTGGAGACGTGCCCCATTTGCAGAAGTACCATCGATACTCGAATAAGGCTTTATTAG 1320 0.4371 MGGSISKRCRGRQHSYSRASSHSCTYPPPQSPYVSERHHLPQEYYGAPSQTYGGGRAPESNKRLERKYSKIDDNYVSLDQVTEALAGAGLESSNLIVGIDFTKSNEWTGGRSFQRRCLHHIGLEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCQGFEEVLSRYRELVPQLKLAGPTSFAPVIEMAITIVEQSGGQYHVLLIIADGQVTRSVDTEGGQLSTQEKQTVEAIVKASEYPLSIILVGVGDGPWDMMKEFDDNIPARVFDNFQFVNFTEIMSKNMDRSRKETEFALAALMEIPSQYKATLELNILGARRGKAIDRVSLPPPLYGAAASLNALAPKSSRSTSFHPSAPSYSDRHYNTDANRPASSASDNHVCPICLCEPKNMAFGCGHQTCCECGQDLETCPICRSTIDTRIRLY 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0549 439 Pfam Zinc finger, C3HC4 type (RING finger) 393 434 - -
Acco13g0549 439 SMART VWA_4 92 295 IPR002035 -
Acco13g0549 439 SUPERFAMILY RING/U-box 391 435 - -
Acco13g0549 439 MobiDBLite consensus disorder prediction 360 391 - -
Acco13g0549 439 SUPERFAMILY vWA-like 94 276 IPR036465 -
Acco13g0549 439 PANTHER COPINE FAMILY PROTEIN 1 31 416 - -
Acco13g0549 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 439 IPR013083 -
Acco13g0549 439 MobiDBLite consensus disorder prediction 1 38 - -
Acco13g0549 439 Pfam Copine 117 330 IPR010734 -
Acco13g0549 439 CDD vWA_copine_like 71 321 IPR010734 -
Acco13g0549 439 ProSiteProfiles Zinc finger RING-type profile. 396 429 IPR001841 -
Acco13g0549 439 MobiDBLite consensus disorder prediction 16 30 - -
Acco13g0549 439 MobiDBLite consensus disorder prediction 360 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0549 Acco-ChrAcco13 3985612 3988483 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco13g0549 13 3985612 3988483 Acco13g0549 13 3985612 3988483 ECH