Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g2085 ATGTTCCTTTTTAGAAAGCAAACCCAGAATCAAGTGGAGAATGATCCCTCCCATAAAGATGCAAAGGTGGCTCAACTGAGGGATGCTCTGGGGCCATTATCTGGGCGAAGTCAAAAGTATTGCACAGACGCATGCCTGAGGAGATATTTAGAAGCCAGAAACTGGAATATTGATAAAGCCAAGAAAATGTTGGAAGAAACACTCAAATGGAGATCCACTTATAAGCCTGAGGAAATCCGTTGGCCTCAAGTGGCACACGAGGGTGAGACAGGAAAATTGTCAAGAGCAAATTTTCATGATCTTTCTGGAAGAACTGTGCTTATAATGAGGCCAGGATTGCAGAACACGTCATGTCCAGAAGATAATATCAAGCATTTAGTGTACCTCATGGAAAATGCTATCCTTAATCTCCCCGAAGGACAACATCAGATGTCGTGGCTGATAGACTTCACTGGATTTTCACTCAGCCTTAACATTTCTGTCAAAACGGCTCGTGATATCATTTACATCTTACAAAACCACTATCCTGATAGGCTTGGTCTTGCTTTCTTGTACAACCCACCAAGGATATTTCAAGCTTTTTGGAAGGCTGTGAGATACTTCTTGGATCCCATCACATTCCAGAAGGTAAAATTTGTTTATCCCAAGGACAAGGAGAGTGAAGAGTTGATGAAATCACTGTTTGACGTGGAAAATCTTCCCACTGAGTTTGGAGGAAAAGCAACATTGAAGTATGATCACGAAGAATTTTCAAGGATGATGATAGAAGATGATGCAAAAACTGCTAAATTCTGGGGAGTTGATGACAAGCTATTCCCCGATTCCCCGCTGAGAATGGCCATTCTAGTACCAGAGCCCATCCGATTGGACTACGAGCCCAGTCCCACTCGTTCCCCAGTGAAATACCTCGAACAATCCTCCTGGGTGATCGATTGTCGGAGAACTATCGTCGACCCCATCTCGGTAGATCAATCGTTGAGAACTGTAACTGGCAAGTCAAAGACCGGTTTGAATTTTATCTTGTGTGAGGTGAAACTCTGTTATGTCGTAACAACAATCATTGCATCCTCTGATGAATGGAAACATCTTTTTCTTTCAGGAAGAGGCAAGATGATAAAAGCCGTATTGGTGATGAACACGCAGGGGAAGCCCCGTCTTGCCAAATTTTATGAATTTTGGGTCCTTCTCCTATGCCATCTACTTGAAGAATTCAATCCTGTGGAGAAGCAACAGGAACTGATACGTAATGTGTTTTCAGTCTTGTGCAGTAGAGCTGAAAATGTTAGTAGTTTTGTGGATGCTGAGTCGATCTATGGTCAGGATGCTCGCCTCGTCTACAAGCACTTTGCAACTTTATACTTCGTGTTCATATTTGATAGTTCTGAAAATGAGCTGGCTATGCTTGACTTAATACAAGTCTTTGTTGAAACGCTGGACAAATGCTTCAGAAATGTCTGTGAACTTGACGTAGTGTACAACTATAGCAAGATGCATTCTATTCTGGATGAGATTATCATTGGAGGCCAGGTTTTGGAAACGAGTTCAACCGAGGTTATGAAGGCTACTGAAGAATTGTCAAGCCTCCAATTCTATCAACCTTGTTCCAAAATCTGTTTCTGGTTGGAGGGCGCGGTAGTCTGTTATCATTTAGGCGTATGGATTGATCTTGATTATATTTATATGTTCCAAGTGTTATGA 1698 0.4205 MFLFRKQTQNQVENDPSHKDAKVAQLRDALGPLSGRSQKYCTDACLRRYLEARNWNIDKAKKMLEETLKWRSTYKPEEIRWPQVAHEGETGKLSRANFHDLSGRTVLIMRPGLQNTSCPEDNIKHLVYLMENAILNLPEGQHQMSWLIDFTGFSLSLNISVKTARDIIYILQNHYPDRLGLAFLYNPPRIFQAFWKAVRYFLDPITFQKVKFVYPKDKESEELMKSLFDVENLPTEFGGKATLKYDHEEFSRMMIEDDAKTAKFWGVDDKLFPDSPLRMAILVPEPIRLDYEPSPTRSPVKYLEQSSWVIDCRRTIVDPISVDQSLRTVTGKSKTGLNFILCEVKLCYVVTTIIASSDEWKHLFLSGRGKMIKAVLVMNTQGKPRLAKFYEFWVLLLCHLLEEFNPVEKQQELIRNVFSVLCSRAENVSSFVDAESIYGQDARLVYKHFATLYFVFIFDSSENELAMLDLIQVFVETLDKCFRNVCELDVVYNYSKMHSILDEIIIGGQVLETSSTEVMKATEELSSLQFYQPCSKICFWLEGAVVCYHLGVWIDLDYIYMFQVL 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g2085 565 SUPERFAMILY CRAL/TRIO N-terminal domain 7 81 IPR036273 -
Acco12g2085 565 MobiDBLite consensus disorder prediction 1 20 - -
Acco12g2085 565 CDD SEC14 99 240 IPR001251 -
Acco12g2085 565 SUPERFAMILY SNARE-like 371 523 IPR011012 -
Acco12g2085 565 PANTHER GH16843P 8 270 - -
Acco12g2085 565 Gene3D - 371 535 - -
Acco12g2085 565 Pfam CRAL/TRIO domain 99 239 IPR001251 -
Acco12g2085 565 SUPERFAMILY CRAL/TRIO domain 81 257 IPR036865 -
Acco12g2085 565 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Acco12g2085 565 ProSitePatterns Clathrin adaptor complexes small chain signature. 444 454 IPR000804 GO:0006886|GO:0016192|GO:0030117
Acco12g2085 565 Pfam CRAL/TRIO, N-terminal domain 42 66 IPR011074 -
Acco12g2085 565 Pfam Clathrin adaptor complex small chain 371 527 IPR022775 -
Acco12g2085 565 FunFam Phosphatidylinositol transfer protein 3 3 273 - -
Acco12g2085 565 CDD AP3_sigma 371 524 IPR027155 GO:0006896|GO:0030123
Acco12g2085 565 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Acco12g2085 565 Gene3D - 4 269 IPR036865 -
Acco12g2085 565 SMART sec14_4 87 242 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g2085 Acco-ChrAcco12 32439365 32445805 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g2085 38 234 Acyl Lipid Metabolism Gene Families AT1G55840 27.315 2.95e-09 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco12g2085 12 32439365 32445805 Acco12g2085 12 32439365 32445805 ECH