Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1005 ATGTTGTGGCGGAAAAAGGATATCGATCTTAGCCGTCGGTGCCTTGTGCCGCCATTAGTTCAATTTCCTACCAAGAGGACTAAGGTGCTAGATAATGACACTCTTGCAAGGAAAAAGCCTTCCTCTGAACAGTCTGACCGCAGCACTTCGCAGCGGCTAGACGCCGAGTTCATTCAAGCTGTGCTGCTGTTTGTTGTAATGCCTTCCATGGCTCAAGGAGGATTCAGAAACTTCACCGGCAGTCAGAAGCCTGGTAGTAAATTATCCAATGAAAATCAGAATCGTCAAACTGATTTCTCTGTCCGGAGACAGAAGATTTTACAGCAGAGAAAGTCTCTTCCAATTGCTTCAGTTGAGAAAAGACTTGTTGAAGAGGTCCGAAAGCATGATATTTTGATAATAGTTGGTGAGACTGGAAGTGGAAAGACCACACAGATCCCCCAATTCCTGTTTGATGCTGGATTTTGTCATGATGGAAAAGTTATTGGAATTACTCAACCTCGGCGTGTTGCTGCTGTTACTGTGGCAAAACGAGTTTCTGAGGAATGTGGTGTTGAGTTGGGCCAAAAGGTTGGTTACTCTATTAGATTTGATGATGCTACCTCAAGTTCAACAAGGATTAAATACATGACTGATGGATTGCTTCTGAGGGAAGCATTATTGGATCCATTTCTTTCTAAGTATTCTGTTATAATTGTTGATGAAGCTCATGAGAGAACTGTCCACACTGATGTCTTGATGGGCTTGCTTAAAAATGTACAACATGCTCGTTCCAATATTGTTTCTGATGGTCAGATACCTAATTCTGAAAACAAGAATGTAAAGAGTGGCATGTCATTGGAGAAAGAATATGGTGGTCAGCCTGGTAGTTTTCTTAGGAAGCACAATAGCAGAAAGTATGCTCCTCTGAAGCTAATCATCATGTCTGCAAGTCTTGATGCTCGGGTGTTTTCTGAGTACTTTGGTGGTGCAAAATGTGTTCATGTCCAAGGGAGACAATTTCCTGTCGATATATTTTATACTCGTCATTCGGTGGCAGACTATTTAGATGCTTCCTTGATAACAATATTCCAGATTCATTTGGGGGAGGGCCCTGGTGATATTCTAGTATTTCTGACTGGCCAAGAAGAGATTGAATCCATTGAAAGGCTAATAAATGAGCGGCTCAAGCAATTACCTGAAAGCAGCCAGAAGCTACTAACTGTGTCTATATTTGCAGCTCTTCCTTCTGAGCAGCAAATGCGAGTATTTGCACCAGCTCCATCTGGATTTCGCAAGGTAATATTGGCAACTAATATTGCTGAAACATCAGTAACAATCCCTGGAATCAAGTATGTAGTGGATCCTGGATTTGTTAAAGCGCGCACTTATGACCCTAGCAAAGGAATGGAATCTTTGGTTGTTGTACCTACATCCAAGTCCCAGGCTCTGCAAAGGAGTGGGCGTGCAGGGCGTGAAGGACCAGGAAAATGTTTTCGTCTTTATCCGGAAAGCGAATTTGAGAAGCTTGAGGACTCAACAAAGCCAGAGATTAAGCGATGCAACCTCTCCAATGTCATTTTGCAGCTTAAGGCTTTAGGTGTTGATGACATACTAGGGTTTGATTTCATTGAGAAACCTTCAAGGGAAGCTATCATCAAATCATTGGAGCAGCTAATCTTGTTAGGTGCTCTAACAGATAACGGTGAACTATCTGATCCAGTTGGAATTCAAATGGCTCGGCTTCCCTTGGACCCAATTTATTCCAAAGCTCTTATTTTAGCTAGTCAGTTTAACTGCTTGGAGGAGATGTTGATAACTGTTGCCATGCTTTCTGTGGAATCCATATTTTATGCTCCTCGTGACAAGTTAGAAGAGGCAAGAACTGCGATGAAATGCTTTTCAAGTCCAGAAGGGGACCACCTGACTTTGATTAATGTGTATCGAGCATCTAATGAGTTCCTAGAAAAGAGATCGATGGGAATGGGTAATGCAAAAGGTGAAAAGGCTCTGAGAAAGTGGTGCAAAGAAAACTTTATCAACAGCCGTTCTCTCAAGCATGCTCGTGACATTCACAAGCAAATTTCGGGGAATGTTGAACAAATGGGCCTGCAAATTGCTTCTTGTGGAGACGATATGCTTCCATACTGCAGATGCCTTGCTGCTTCCTTTTTCCTGAATGCAGCTGTAAAGCAGCCAGAGGGAACATACAGGGCTCTCGCAAGCGGTCAGGTGGTGCAGATCCACCCTTCTTCAGTACTGTTTCAACAAAAACCAGAGTGCATAATATTTAATGAACTGGTCCAAACTAATAACAAGTATATACGGAATATAACTAGAATTGACTACCTGTGGTTGACTGAGCTGGCTCCTCAATATTTTGCTTTTCAGAATTAA 2376 0.4238 MLWRKKDIDLSRRCLVPPLVQFPTKRTKVLDNDTLARKKPSSEQSDRSTSQRLDAEFIQAVLLFVVMPSMAQGGFRNFTGSQKPGSKLSNENQNRQTDFSVRRQKILQQRKSLPIASVEKRLVEEVRKHDILIIVGETGSGKTTQIPQFLFDAGFCHDGKVIGITQPRRVAAVTVAKRVSEECGVELGQKVGYSIRFDDATSSSTRIKYMTDGLLLREALLDPFLSKYSVIIVDEAHERTVHTDVLMGLLKNVQHARSNIVSDGQIPNSENKNVKSGMSLEKEYGGQPGSFLRKHNSRKYAPLKLIIMSASLDARVFSEYFGGAKCVHVQGRQFPVDIFYTRHSVADYLDASLITIFQIHLGEGPGDILVFLTGQEEIESIERLINERLKQLPESSQKLLTVSIFAALPSEQQMRVFAPAPSGFRKVILATNIAETSVTIPGIKYVVDPGFVKARTYDPSKGMESLVVVPTSKSQALQRSGRAGREGPGKCFRLYPESEFEKLEDSTKPEIKRCNLSNVILQLKALGVDDILGFDFIEKPSREAIIKSLEQLILLGALTDNGELSDPVGIQMARLPLDPIYSKALILASQFNCLEEMLITVAMLSVESIFYAPRDKLEEARTAMKCFSSPEGDHLTLINVYRASNEFLEKRSMGMGNAKGEKALRKWCKENFINSRSLKHARDIHKQISGNVEQMGLQIASCGDDMLPYCRCLAASFFLNAAVKQPEGTYRALASGQVVQIHPSSVLFQQKPECIIFNELVQTNNKYIRNITRIDYLWLTELAPQYFAFQN 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1005 791 SMART helicmild6 379 487 IPR001650 -
Acco12g1005 791 Gene3D - 534 703 - -
Acco12g1005 791 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 333 507 - -
Acco12g1005 791 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 123 330 IPR014001 -
Acco12g1005 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 742 IPR027417 -
Acco12g1005 791 SMART ha2_5 547 638 IPR007502 GO:0004386
Acco12g1005 791 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 229 238 IPR002464 -
Acco12g1005 791 Gene3D - 333 506 IPR027417 -
Acco12g1005 791 MobiDBLite consensus disorder prediction 76 96 - -
Acco12g1005 791 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 711 786 IPR011709 -
Acco12g1005 791 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 348 527 IPR001650 -
Acco12g1005 791 CDD SF2_C_RHA 334 495 - -
Acco12g1005 791 SMART ultradead3 111 339 IPR014001 -
Acco12g1005 791 MobiDBLite consensus disorder prediction 31 50 - -
Acco12g1005 791 MobiDBLite consensus disorder prediction 31 45 - -
Acco12g1005 791 Pfam Helicase associated domain (HA2) 548 672 IPR007502 GO:0004386
Acco12g1005 791 PANTHER ATP-DEPENDENT RNA HELICASE 83 779 - -
Acco12g1005 791 Pfam Helicase conserved C-terminal domain 360 486 IPR001650 -
Acco12g1005 791 CDD DEXHc_DHX33 113 329 - -
Acco12g1005 791 Gene3D - 73 332 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1005 Acco-ChrAcco12 10378665 10387196 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco12g1005 12 10378665 10387196 Acco12g1005 12 10378665 10387196 ECH