LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco12g0746	ATGGCTCTCTCTCGCTTCGCTTCTTCTTCTTCTTCTTCTTCGTCTAGATCCAATCTTCTTAGACTCATCCCATCTGCATTCTCCTCCGCCCCTTCTCTCCCCCGCTCGCTTTCCTCTTCCGCCGATGACTCCTCCACCCTCACCATTGAAACCTCTCTTCCATTCAGCGCCCACAATTGCGACACCCCCTCGCGCTCCGTCGATACCACTCCCAAGGAACTCATGTCCTTCTTCCGCGACATGGCCGTCATGCGACGGATGGAGATTGCCGCGGACTCCCTCTATAAGTCTAAACTCATCCGAGGGTTCTGTCACTTGTATGATGGCCAGGAAGCTGTGGCCATCGGCATGGAGGCTGCCACTACCAGGAAGGATTGCATAATAACATCTTACCGTGATCATTGTATCTTCCTGGCCCGCGGCGGAACCCTGTTGGAGGTGTTTGCGGAGCTCATGGGTCGTAAAGATGGATGCGCGAATGGAAAGGGTGGCTCTATGCACTTCTATAGGAAGGAAGCTGGGTTCTATGGCGGTCACGGGATCGTTGGGGCTCAGATACCGCTTGGATGTGGATTAGCTTTTGCTCAGAAGTACTCTAAGACTCAAAATGTCACCTTCGCAATGTATGGTGATGGTGCGGCAAATCAGGGGCAGTTGTTCGAGGCGCTAAACATAGCCGCGCTTTGGGATCTCCCTGCAATTTTGGTCTGCGAGAATAATCATTACGGGATGGGGACGGCAGGATGGAGAGCTTCTAAGAGTCCTGCTTATTACAAGCGTGGGGACTATGTTGCTGGGTTGAAGGTAGATGGCATGGATGTTCTTGCTGTAAAACAGGCATGCACATTTGTAAAGGAGTATGCTTTGAAGAATGGGCCCATTGTTCTTGAATTGGACACCTACAGGTACCATGGGCATTCCATGTCAGATCCTGGTAGCACATATCGTACACGTGATGAGGTTTCTGGCGTGAGACAGGAGCGTGATCCAATTGAGAGAGTGAGGAAGCTGCTATTGAAACACGAGATTGCAGCTGAAAAGGAACTAAAGGACATTGAAAAGGAAGTCAAAAAAGAAGTTGATGAAGCTATAGCTATAGCAAAGGAGAGTTCATTGCCGGAGCCATCTGAATTATTTACCAATATATACGTTGATGGTTTAGGGACTGAGTCATTTGGGGCTGACAGAAAGGAAGTTAGAGTTACTTTACCATGA	1215	0.4938	MALSRFASSSSSSSSRSNLLRLIPSAFSSAPSLPRSLSSSADDSSTLTIETSLPFSAHNCDTPSRSVDTTPKELMSFFRDMAVMRRMEIAADSLYKSKLIRGFCHLYDGQEAVAIGMEAATTRKDCIITSYRDHCIFLARGGTLLEVFAELMGRKDGCANGKGGSMHFYRKEAGFYGGHGIVGAQIPLGCGLAFAQKYSKTQNVTFAMYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAGWRASKSPAYYKRGDYVAGLKVDGMDVLAVKQACTFVKEYALKNGPIVLELDTYRYHGHSMSDPGSTYRTRDEVSGVRQERDPIERVRKLLLKHEIAAEKELKDIEKEVKKEVDEAIAIAKESSLPEPSELFTNIYVDGLGTESFGADRKEVRVTLP	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco12g0746	404	Gene3D	-	29	398	-	-
	Acco12g0746	404	PANTHER	PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR	39	386	-	-
	Acco12g0746	404	SUPERFAMILY	Thiamin diphosphate-binding fold (THDP-binding)	66	385	IPR029061	-
	Acco12g0746	404	NCBIfam	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	72	384	IPR017597	GO:0004739\|GO:0006086\|GO:0043231
	Acco12g0746	404	FunFam	Pyruvate dehydrogenase E1 component subunit alpha	36	397	-	-
	Acco12g0746	404	Coils	Coil	342	362	-	-
	Acco12g0746	404	CDD	TPP_E1_PDC_ADC_BCADC	77	367	-	-
	Acco12g0746	404	Pfam	Dehydrogenase E1 component	80	375	IPR001017	GO:0016624

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco12g0746	Acco-ChrAcco12	7032296	7036405	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco12g0746	1	404	Acyl Lipid Metabolism Gene Families	AT1G24180	74.505	0.0	641

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Acco12g0746	12	7032296	7036405	Acco12g0746	12	7032296	7036405	ECH