Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0563 ATGGCTTTTTCGGCAACCTTCCTTAAGCCTGACCGGTACTGTCTCTCTCCATGGCATAAGGCTCCAACTTCAAACCATGCTTGCAGAAAGCAGTTTTGTGTGAGAGGTTCAACGAGTGGTTCTGACGACGGCGAAAAGACGATTATAAGGAGGACAGATGATGGTTGGAAGATCATTTATTCCGGGGAGAAGCCGGAAACGCCATTGTTGGATACAATCAACTACCCTCGTCATATGAAGAATCTATCCACACAGGATCTTGAAAAACTTGCAGCAGAGCTAAGAGCAGATATTGTTTATACTGTGTCAGGTACTGGTGGGCATCTTAGTTCAAGCTTAGGAGTGGTGGAGTTAACAGTGGCCCTGCATCATGTTTTCAACACCCCAGAAGATAAGATCATATGGGATGTTGGTCACCAGGCATATCCACACAAGATTCTCACAGGTCGAAGGTCAAGGATGCACACCATCAGGAAAACTTTTGGGCTAGCAGGGTTTCCTAAAAGGGATGAAAGTATTCATGATGCTTTTGGGGCAGGGCACAGTTCTACAAGCATATCTGCTGGTCTAGGCATGGCGGTTGGGAGGGATCTACTGGGAAAGAACAACAGTGTCATCTCAGTGATCGGAGATGGAGCAATGACTGCTGGTCAAGCTTATGAGGCGATGAACAACGCAGGATTTCTTGATGCTAATTTGATAGTTATACTGAATGATAACAAGCAAGTCTCTTTACCAACTGCCACCCTTGATGGCCCTGCAACACCAGTTGGAGCACTAAGCAGTGCTTTAAGCAAAATTCAAGCTAGCACCCAATTCCGAAAACTTAGAGAAGCTGCAAAGAACATCACAAGGCAAATAGGGGGGCAAACTCATGAAGTTGCAGCAAAAGTAGATGAGTATGCAAGAGGAATGATCAGTGCTTCTGGGTCTACGCTTTTTGAGGAGCTTGGCTTATATTACATTGGCCCTGTGGATGGTCATAACATTGAAGATCTAGTCAGCATTTTCCAGAAAGTGAAAGCGATGCCTGCCCCAGGTCCAGTTTTGATTCACATTGTGACAGAGAAAGGGAAAGGATATACCCCAGCAGAGGCAGCAGATGATAAAATGCATGGTGTTGTCAAGTTCGACCCAAAAACTGGCAAACAATTCAAGTCAAAGTCCTCAACACTTCCATATACACGATACTTTGTTGAATCCTTGATAAAGGAAGCTGAAGTAGACAATAAGATAGTAGGCATTCATGCAGCCATGGGTGGAGGAACGGGTCTAAATTATTTCCAGAAAAGGTTTCCAGAACGCTGCTTTGATGTGGGGATAGCTGAACAACACGCCGTTACATTTGCAGCAGGATTAGCCACAGAAGGTCTCAAGCCATTCTGTGCTATCTATTCGTCATTTCTGCAACGTGGCTATGATCAGGTGGTGCATGATGTAGATCTTCAGAAATTACCTGTCCGCTTTGCTTTGGATAGAGCTGGTCTGGTTGGTGCAGATGGACCAACCCACTGTGGAGCATTTGATGTCACGTACATGGCCTGCTTGCCCAACATGGTGGTCATGGCTCCATCTGATGAAGCGGAACTGATGCACATGGTTGCAACGGCAGCAGCCATAGATGACAGACCAAGCTGTTTTAGATTCCCAAGGGGCAACGGAATTGGAGTCGATTTGCCCCTCAATAACAAAGGAACCCCACTTGAGATAGGAAAAGGCAGAATGCTGATAGAAGGCAGCAGGGTTGCTATTTTAGGATACGGTTCTATAGTTCAACAATGCCTGCAAGCTGCAAAAATGCTACAAAGAGAAGGCGTTTCTGTGACTGTTGCTGATGCTAGGTTCTGCAAACCGTTGGATGCTGATCTCATTAAACAACTAGCCAAGGAACATGAAATTCTCATCACAGTGGAAGAAGGATCTATTGGAGGTTTTGGATCTCACGTGTCGCATTTCCTTGGCTTAAGCGGTATCTTGGATGGACCTTTAAAGTGGAGGTCACTGATGCTTCCTGATAGATATATCGATCATGGATCACCTGAAGATCAGATTGAAGAAGCAGGACTATCATCAAAGCATATTGCTGCAACAGTCTTGTCTCTTCTGGACAGGCCAAAACAAGCTCTTCTGTTCAAGTAA 2139 0.4525 MAFSATFLKPDRYCLSPWHKAPTSNHACRKQFCVRGSTSGSDDGEKTIIRRTDDGWKIIYSGEKPETPLLDTINYPRHMKNLSTQDLEKLAAELRADIVYTVSGTGGHLSSSLGVVELTVALHHVFNTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRKTFGLAGFPKRDESIHDAFGAGHSSTSISAGLGMAVGRDLLGKNNSVISVIGDGAMTAGQAYEAMNNAGFLDANLIVILNDNKQVSLPTATLDGPATPVGALSSALSKIQASTQFRKLREAAKNITRQIGGQTHEVAAKVDEYARGMISASGSTLFEELGLYYIGPVDGHNIEDLVSIFQKVKAMPAPGPVLIHIVTEKGKGYTPAEAADDKMHGVVKFDPKTGKQFKSKSSTLPYTRYFVESLIKEAEVDNKIVGIHAAMGGGTGLNYFQKRFPERCFDVGIAEQHAVTFAAGLATEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFALDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELMHMVATAAAIDDRPSCFRFPRGNGIGVDLPLNNKGTPLEIGKGRMLIEGSRVAILGYGSIVQQCLQAAKMLQREGVSVTVADARFCKPLDADLIKQLAKEHEILITVEEGSIGGFGSHVSHFLGLSGILDGPLKWRSLMLPDRYIDHGSPEDQIEEAGLSSKHIAATVLSLLDRPKQALLFK 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0563 712 Pfam Transketolase, pyrimidine binding domain 394 553 IPR005475 -
Acco12g0563 712 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 69 703 IPR005477 GO:0008661|GO:0016114
Acco12g0563 712 SUPERFAMILY TK C-terminal domain-like 566 702 IPR009014 GO:0003824
Acco12g0563 712 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 67 454 IPR029061 -
Acco12g0563 712 Gene3D - 62 364 - -
Acco12g0563 712 Gene3D - 393 560 - -
Acco12g0563 712 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 72 702 IPR005477 GO:0008661|GO:0016114
Acco12g0563 712 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 391 559 - -
Acco12g0563 712 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 70 355 IPR005477 GO:0008661|GO:0016114
Acco12g0563 712 SMART Transket_pyr_3 392 557 IPR005475 -
Acco12g0563 712 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 389 580 IPR029061 -
Acco12g0563 712 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 27 709 IPR005477 GO:0008661|GO:0016114
Acco12g0563 712 Gene3D - 571 703 IPR009014 GO:0003824
Acco12g0563 712 CDD TPP_PYR_DXS_TK_like 398 551 - -
Acco12g0563 712 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 571 703 - -
Acco12g0563 712 Pfam Transketolase, C-terminal domain 571 694 IPR033248 -
Acco12g0563 712 CDD TPP_DXS 106 361 IPR005477 GO:0008661|GO:0016114
Acco12g0563 712 ProSitePatterns Transketolase signature 2. 498 514 IPR020826 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0563 Acco-ChrAcco12 5076793 5080731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0563 354 650 Acyl Lipid Metabolism Gene Families AT3G13450 22.258 3.63e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco12g0563 12 5076793 5080731 Acco12g0563 12 5076793 5080731 ECH