Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0145 ATGGGTAGGACAATTCAGCTGTATGGATTCCCTCGTGACGTTACTGAGTCCACAGTTAAGCCATTTGTAGAGCAGATTACTGGTGAAGGTACTGTCTCTGCCATTAAGATAAGGCGAGGCAAGGGTAAAGTTCCAAGAGCATTTGCTATCATTCAATTCGAAGATGCAAAGAATGCTTCTGACCTTATTTCCCGGCCGGACAAAGGCATATGGTATGGGGAATCCTACCTTAAGGCTCAAGCACTGGAAAAAGATATCGTACCAATGCCAAGAACATTTTTGCATAGCTTGGAGGATGTGAAACTGCATTTTGGTTGCCAGATGTCAAAGGAAAGATTTCATGTCTTATGGACATCGGTTACTAAGGAAGTAAACTTTGGGAATGGGACGAGAAAGATACAGTTCCTTCTGTCCTATAGACTGGCGGATTATAAGCTTGAGCTTTCGTATGAGAACATTTTGCAGATTGAGCTGCACCGTCCACGTGGTGAAACCGCAGTGTATCTTCTGATTCAGCTGGTTGGTGCTCCTCGAGTATTTGAGAAAGATGCTCGTACTTCAGGAAGTACATTTCAAGATCATGTTCTCAACTTTTGCAAAGATAGTTCCAATGATCAGTGGATCCGGACAGTTGATTTCACTCCTTTTCGCAGTATTGGGCAGTCTTCTCATATATACTTGCAGCTTCCTTATGGTGGACGTCTTCCAAATTTCAGGGAAAACTTTCCTTATTATAAGGAAAGTGAGAGGAAGTTCTCTTTGGAGGAAGGAAGTCACTTTTCTAGCAATTTGAATACAGTCCCTATTGTTGCTCCTCCTCAGGGAATTTACATCCCATATGACATCCTGTTCAAAGTTAACTCCTTGCTTCAGCATGGGTGTCTTGCAGGTCCAGCAATAGATAGACGCTTCTATAGTTTAATTGATCCACGTAGAAAGGGTCGTGATTTTGTTGAACATGCATTGGACAAAATGTTTTTTTCAAAGGAATTCTGCTCTGACCCCTCAACGTGGATGATTGATCAGTTCAAAAAGCATCGTGCATCAAAGTATCCTTCCCAGTCACCTTCCATATCCCTAGACAATGGCTTGGTATATGTTCGCAGGGTTCAGATTACACCTTGTAAAGTGTATTTCAGTGGCCCAGAGGCTAATGTCTCAAATCGTGTCCTTCGCCATTTCCATGAGTTCCTTGATAACTTCCTACTTGTTTCATTTGTTGACGAGGAGTTGGATAAACTGTTTTCAACACATTTATCTCTACGCAACTCTAGTGAACAAAGAAAAACGGAGATCTATACAAGAATTCTTTCCATTCTTAGAAATGGCATATTAATTGGTGATAAAAAGTTTGAATTTCTAGCATTCTCATCAAGTCAATTGCGGGAGAATTCTTTATGGATGTTTGCTCCTGCTCCTGCGCATGGACTTAATGCCGCTGCCATTAGAGATTGGATGGGGAATTTTCGCAGCATTAGAAATGTAGCTAAATATGCTGCCAGGCTGGGTCAATCTTTTGGTTCTTCTACTGAAACTTTAAGTGTTAGCCAGAATGAAACTGAGATGATTCCTGATGTGGAGGTTAAAAATGGTGAAATTAACTATGTTTTCTCCGATGGGATTGGGAAGATTTCCGCTGAATTTGCGAAGAAAGTGTCTAAAAAATGTGGGTATAAATCACCCACTCCGTCTGCCTTTCAGATTCGATATGGTGGGTACAAAGGGGTTGTGGCTGTTGACCCAGTATCATCAGTAAAATTATCTCTGAGGAAGAGCATGCTCAAGTATGATTCAGATAATACAAAACTAGATGTCTTGGCAAGTAGTAAATTTCAGCCTTGTTATCTGAATCGGCAGATAATCACACTCTTATCTACTCTTGGTGTCAAGGATCATGTTTTTGAGAAGAAACAGAAGGAAGCTGTAGACCAACTCAACTCATTACTAACAGATTCATTAAAGGCTCAGGAGGCTCTGGACTTGATGTCTCCTGGGGAGATATCTAATATTCTGAAGGAGATGCTTATCTGCGGTTATAGGCCTGATGAAGAACCTTTTCTTTCAATGATGCTGCAAACATTCAGGGCATCAAAACTATTGGAATTGCGACGCAGAACTAGAATTGTTGTCTCACAAGGAAGAGCAATGATGGGATGTCTGGATGAAACAAGAACCTTGGAATATGGTCAAGTATTTGTGCAGTATTCTGATAACAGGTCCCTGCCATTGTCTAATGATTCTGCTGCCTATGGCTTTCAGGGACCTTATATAGTTACAGGTAAGGTGGTTGTTGCCAAAAATCCATGCTTGCATCCCGGTGATGTACGTGTTTTGAAGGCTGTTGATGTGCCAGCTCTTCGTCACATGGTCGATTGTGTTGTTTTCCCGCAAAAAGGATCCAGGCCTCATCCAAATGAGTGTTCGGGAAGTGATCTAGATGGCGACATCTACTTTGTTTGTTGGGACCCCGAATTAATTCCGCCTCGCCAAATCCCACCGATGGATTATACTCCAGCCCAAAGCATACAATTGGATCATGATGTCACGATGGAGGAGGTTGAGGAATACTTTGTCAACTATATAGTCAATGACAGTCTAGGAATAATTGCAAATGCCCACACTGTCTTCGCAGATAGAGAGCCCGATATGGCAATGGCTGCACCATGCATTGAGCTTGCAAAGCTATTTTCGATTGCCGTTGACTTTCCAAAAACCGGTGTCCCAGCTGTTATACCTCGTGAACAATATGTCAAAGAATATCCAGACTTCATGGAGAAACCTGATAAACCCACCTATGAATCAATGAATGTGATCGGAAAGCTTTTTAGGGAAGTGAAGAAAATTGCACCTGAAGCTGACTCTTCTCCAGCCTTCACTCGGGAAATGGCTAGAAAGTCATATGACCCTGATATGGAAGTCGATGGCTTTTTGGATTATGTTGATGATGCTTTCTATCACAAAAGCAATTATGACTTCAAGTTGGGAAATTTGATGGATTATTATGGCTTCAAAACTGAAGCTGAAATCCTGAGTGGGAATATTATGACAAAGTCCAAATCTTTTACCAGAAGAAAGGATGCAGAAGCAATCGCAATGGCTGTGAGATCCCTAAGAAAAGAAGCTAAGAACTGGTTCTACAGCCGTGGGAGTGCAGAAGATTGTTGGAAGGAGGACATGAATGCAAAAGCATCTGCTTGGTACTATGTTACCTATCATCCAAGTTATTGGGGTTTCTACAATGAAGGTTTGAACCGGGCTCACTTTCTAAGCTTCGCATGGTGTGTTTATGATAAACTCTTCACAATCAAGAAGGAGAAAGCCAGCATTAGAAGGTCTCTTCAACGATCTTCCTTGGAACATAAGTTACGAAGTGCCGTCTTTGGATTGACTACTTGA 3396 0.417 MGRTIQLYGFPRDVTESTVKPFVEQITGEGTVSAIKIRRGKGKVPRAFAIIQFEDAKNASDLISRPDKGIWYGESYLKAQALEKDIVPMPRTFLHSLEDVKLHFGCQMSKERFHVLWTSVTKEVNFGNGTRKIQFLLSYRLADYKLELSYENILQIELHRPRGETAVYLLIQLVGAPRVFEKDARTSGSTFQDHVLNFCKDSSNDQWIRTVDFTPFRSIGQSSHIYLQLPYGGRLPNFRENFPYYKESERKFSLEEGSHFSSNLNTVPIVAPPQGIYIPYDILFKVNSLLQHGCLAGPAIDRRFYSLIDPRRKGRDFVEHALDKMFFSKEFCSDPSTWMIDQFKKHRASKYPSQSPSISLDNGLVYVRRVQITPCKVYFSGPEANVSNRVLRHFHEFLDNFLLVSFVDEELDKLFSTHLSLRNSSEQRKTEIYTRILSILRNGILIGDKKFEFLAFSSSQLRENSLWMFAPAPAHGLNAAAIRDWMGNFRSIRNVAKYAARLGQSFGSSTETLSVSQNETEMIPDVEVKNGEINYVFSDGIGKISAEFAKKVSKKCGYKSPTPSAFQIRYGGYKGVVAVDPVSSVKLSLRKSMLKYDSDNTKLDVLASSKFQPCYLNRQIITLLSTLGVKDHVFEKKQKEAVDQLNSLLTDSLKAQEALDLMSPGEISNILKEMLICGYRPDEEPFLSMMLQTFRASKLLELRRRTRIVVSQGRAMMGCLDETRTLEYGQVFVQYSDNRSLPLSNDSAAYGFQGPYIVTGKVVVAKNPCLHPGDVRVLKAVDVPALRHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPPRQIPPMDYTPAQSIQLDHDVTMEEVEEYFVNYIVNDSLGIIANAHTVFADREPDMAMAAPCIELAKLFSIAVDFPKTGVPAVIPREQYVKEYPDFMEKPDKPTYESMNVIGKLFREVKKIAPEADSSPAFTREMARKSYDPDMEVDGFLDYVDDAFYHKSNYDFKLGNLMDYYGFKTEAEILSGNIMTKSKSFTRRKDAEAIAMAVRSLRKEAKNWFYSRGSAEDCWKEDMNAKASAWYYVTYHPSYWGFYNEGLNRAHFLSFAWCVYDKLFTIKKEKASIRRSLQRSSLEHKLRSAVFGLTT 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0145 1131 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 3 84 IPR000504 GO:0003723
Acco12g0145 1131 CDD RRM_SF 5 59 - -
Acco12g0145 1131 Gene3D - 1 86 IPR012677 -
Acco12g0145 1131 Pfam RNA dependent RNA polymerase 372 945 IPR007855 GO:0003968
Acco12g0145 1131 PANTHER RNA-DEPENDENT RNA POLYMERASE 3 1111 IPR007855 GO:0003968
Acco12g0145 1131 SUPERFAMILY RNA-binding domain, RBD 2 79 IPR035979 GO:0003676
Acco12g0145 1131 SMART rrm1_1 4 80 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0145 Acco-ChrAcco12 1271307 1276104 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco12g0145 12 1271307 1276104 Acco12g0145 12 1271307 1276104 ECH