Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2344 ATGGCCTCACTTTCTGGTGACACTCCGCCATTAATTTAAAAAAAAAAGAAAAAAGAACTTCATCAAATCTCTTTCGTCTTTCCGAGAAAAATCATGACCAGCTCTTCCGCTGCCTCTCGCAAGGCTCTCAGTAAGATTGCCTGCAATAGGCTTCAGAAGGAACTTGTTGAGTGGCAGGTTAACCCCCCCGCCGGTTTCAAGCACAAAGTCACCGATAATCTCCAAAGGTGGGTTATTGAAGTGACTGGAGCTCCGGGTACACTTTACGCCAATGAAACATACCAACTTCAGGTCGACTTTCCCGAGCACTACCCCATGGAAGCTCCACAGGTCATATTTTTGCACCCTGCTCCACTGCATCCCCATATCTATAGCAACGGGCACATTTGTTTAGATATACTGTATGACTCATGGTCTCCGGCCATGACAGTTAGTTCTATCTGCATCAGCATTCTTTCAATGCTTTCAAGCTCGACGGTAAAGCAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGTAGATCTCCTAAGGAGACCAGATGGTGGTTCCATGATGATAAAGTATAA 579 0.4525 MASLSGDTPPLIXKKKKKELHQISFVFPRKIMTSSSAASRKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVTGAPGTLYANETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTVKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2344 192 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 46 192 IPR000608 -
Acco11g2344 192 Gene3D Ubiquitin Conjugating Enzyme 46 192 IPR016135 -
Acco11g2344 192 CDD UBCc 48 148 IPR000608 -
Acco11g2344 192 Pfam Ubiquitin-conjugating enzyme 50 185 IPR000608 -
Acco11g2344 192 FunFam probable ubiquitin-conjugating enzyme E2 16 44 192 - -
Acco11g2344 192 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 119 134 IPR023313 -
Acco11g2344 192 SUPERFAMILY UBC-like 37 157 IPR016135 -
Acco11g2344 192 SMART ubc_7 49 192 - -
Acco11g2344 192 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 46 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2344 Acco-ChrAcco11 36840508 36844994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2344 43 159 Miscellaneous Gene Families AT1G17280 27.869 1.35e-06 45.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2344 11 36840508 36844994 Acco11g2344 11 36840508 36844994 ECH