Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2162 ATGGTATCCGAATCGGAGCTTATCGGCCGCCTCCGGGAATTTCTTCGCTGCTCCGACCTCAACACCACCACCACTACTACGGTGCGCCGCCAGTTGGAGAAGGATTTTGGAATTGATTTATCGGATAGGAAGGCGTTCATCAGGGATCAGGTCGACTTGTTCCTTCAAAGCGAGCGCGAGCAACCCGAGGAACATGAGGAACCCGAGGCTGAAGAAGATCAAAAGGACGAGCCTCAGCCGGAGCATGAATCAGAAGAAAGCGAAGATTCTAATGATGAAATGCAAGACGATGAAGATACGGTAAAGCCTTCCAGGAATGGCAAGGACAAAAGACGTTCTAAAAGTTCAGGAAGTGGGGTGCGAAGAAAAGGTGGTGGTTTTTGCAAGTTATGTAGCCTTTCTCCACAACTTCAGGAATTTGTTGGAGCACCAGAAATGGCAAGGACCGAGGTTGTTAAGCAATTATGGGCACACATAAGGGAGAAGAATTTGCAAGATGCAAATAACAGGCGGAATATAATTTGTGATGAACCATTACGTGCCCTTTTTAATGTTGATTCGATCAACATGTTTCAAATGAATAAAGCATTGTCAAAGCATATCTGGCCATTGGATTCTGATGATGTCATCCAGGTGAAGTCTGCACCAAAGGAAAAACACAAGAAGCAAGAGAGAGAAGAAGATCCAGATGAACCAAAAAGAAAGGAAAAACGGCAGAAGGGAGGAAAATCAGGGTTTCTTGCTCCTCTTCAACTGTCTGATGCTCTTGTAAACTTCCTTGGTACCGGAGAAAATGCATTATCACGTGCTGATGTCATAAAAAGAATGTGGGATTACATAAAAGGAAACAACCTTCAGGATCCTTCTGACAAGAGGAACATAATCTGTGATGAGAAGCTGAAAGAACTCTTCGACGTTGACTCTTTCAACGGTTTCACAGTTTCGAAACTACTGGCTCCTCATTTCATAAAGGCAGAGCAGTGA 984 0.4431 MVSESELIGRLREFLRCSDLNTTTTTTVRRQLEKDFGIDLSDRKAFIRDQVDLFLQSEREQPEEHEEPEAEEDQKDEPQPEHESEESEDSNDEMQDDEDTVKPSRNGKDKRRSKSSGSGVRRKGGGFCKLCSLSPQLQEFVGAPEMARTEVVKQLWAHIREKNLQDANNRRNIICDEPLRALFNVDSINMFQMNKALSKHIWPLDSDDVIQVKSAPKEKHKKQEREEDPDEPKRKEKRQKGGKSGFLAPLQLSDALVNFLGTGENALSRADVIKRMWDYIKGNNLQDPSDKRNIICDEKLKELFDVDSFNGFTVSKLLAPHFIKAEQ 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2162 327 Gene3D - 1 58 - -
Acco11g2162 327 MobiDBLite consensus disorder prediction 214 245 - -
Acco11g2162 327 SUPERFAMILY SWIB/MDM2 domain 123 205 IPR036885 -
Acco11g2162 327 Gene3D SWIB/MDM2 domain 121 209 IPR036885 -
Acco11g2162 327 SMART swib_2 127 206 IPR019835 -
Acco11g2162 327 SMART swib_2 246 327 IPR019835 -
Acco11g2162 327 MobiDBLite consensus disorder prediction 55 122 - -
Acco11g2162 327 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 56 IPR014876 -
Acco11g2162 327 Gene3D SWIB/MDM2 domain 240 327 IPR036885 -
Acco11g2162 327 Pfam SWIB/MDM2 domain 130 201 IPR003121 -
Acco11g2162 327 Pfam SWIB/MDM2 domain 249 322 IPR003121 -
Acco11g2162 327 SUPERFAMILY SWIB/MDM2 domain 243 326 IPR036885 -
Acco11g2162 327 MobiDBLite consensus disorder prediction 82 96 - -
Acco11g2162 327 FunFam Upstream activation factor subunit 121 209 - -
Acco11g2162 327 CDD SWIB-MDM2_like 131 201 - -
Acco11g2162 327 CDD SWIB-MDM2_like 250 322 - -
Acco11g2162 327 ProSiteProfiles SWIB/MDM2 domain profile. 245 324 IPR003121 -
Acco11g2162 327 ProSiteProfiles SWIB/MDM2 domain profile. 126 203 IPR003121 -
Acco11g2162 327 MobiDBLite consensus disorder prediction 97 114 - -
Acco11g2162 327 Pfam DEK C terminal domain 2 55 IPR014876 -
Acco11g2162 327 SUPERFAMILY DEK C-terminal domain 3 56 - -
Acco11g2162 327 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 6 206 - -
Acco11g2162 327 MobiDBLite consensus disorder prediction 214 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2162 Acco-ChrAcco11 35546527 35550967 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Acco11g2162 SWIB 2.2e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2162 11 35546527 35550967 Acco11g2162 11 35546527 35550967 ECH