Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1488 ATGTCCATTTCCCTGAGCTGTTTTTGCTCCAAGAAGATTAGACAAAAGGCAAAGCATGAACAGTACTTCAATCTTTCTTCAGAGACATGGTTCACGGTGAATGAAGTGGAGGCCTTGCTTGACTTGTTTAAAATACTAAGCAGTTCAATTGTTGATGATGGCCTTATTCACAAGGAGGAGTTTCAGCTTGCACTTTTCCGAAACAGCAGGAAAGAGAATCTATTTTCAGACAGGGTGTTTGATATGTTTGATACTAAGAGTGATGGAGCAATTAACTTTGAGGAATTTGTCCGGTCACTAAGCATCTTTCATCCAAATGCTCCTACAGAGATGAAGATTGCATTTGCATTTAAATTGTATGATCTTCGGAAGACTGGATACATCGAGCGTGAGGAGTTGAAGATGATGGTCTTGGCTATTCTGGCTGAATCAGATATAGAAGTTTCTGATGATGTTGCAGAAGCAATTGTGGACAAGACCTTAAAGGACGCAGACTCAAATGGAGATGGAAAGATTGATGAAGAGGAGTGGAAAGAATTCGTGGCAAAGAATCCGTCCCTCTTAAAGATGATGACTCTTCCATGTCTAAAGGATTTAACCCTGGCCTTCACCAGTTTCATATTTAAAACACAGGTTGATGATGAAGAGCACGGATTATAG 660 0.4015 MSISLSCFCSKKIRQKAKHEQYFNLSSETWFTVNEVEALLDLFKILSSSIVDDGLIHKEEFQLALFRNSRKENLFSDRVFDMFDTKSDGAINFEEFVRSLSIFHPNAPTEMKIAFAFKLYDLRKTGYIEREELKMMVLAILAESDIEVSDDVAEAIVDKTLKDADSNGDGKIDEEEWKEFVAKNPSLLKMMTLPCLKDLTLAFTSFIFKTQVDDEEHGL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1488 219 Pfam EF hand 79 98 IPR002048 GO:0005509
Acco11g1488 219 CDD EFh 112 182 IPR002048 GO:0005509
Acco11g1488 219 SMART efh_1 75 103 IPR002048 GO:0005509
Acco11g1488 219 SMART efh_1 112 140 IPR002048 GO:0005509
Acco11g1488 219 SMART efh_1 156 184 IPR002048 GO:0005509
Acco11g1488 219 PRINTS Recoverin family signature 172 192 - -
Acco11g1488 219 PRINTS Recoverin family signature 79 100 - -
Acco11g1488 219 PRINTS Recoverin family signature 126 144 - -
Acco11g1488 219 PANTHER CALCINEURIN B 6 214 IPR045198 GO:0005509|GO:0019722|GO:0019900
Acco11g1488 219 Gene3D - 23 215 - -
Acco11g1488 219 ProSiteProfiles EF-hand calcium-binding domain profile. 108 143 IPR002048 GO:0005509
Acco11g1488 219 FunFam calcineurin B-like protein 3 21 214 - -
Acco11g1488 219 SUPERFAMILY EF-hand 25 196 IPR011992 -
Acco11g1488 219 ProSitePatterns EF-hand calcium-binding domain. 165 177 IPR018247 -
Acco11g1488 219 ProSiteProfiles EF-hand calcium-binding domain profile. 152 187 IPR002048 GO:0005509
Acco11g1488 219 ProSiteProfiles EF-hand calcium-binding domain profile. 71 106 IPR002048 GO:0005509
Acco11g1488 219 Pfam EF-hand domain pair 111 180 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1488 Acco-ChrAcco11 29385825 29389632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1488 5 214 EF-hand Containing Proteins AT4G17615 57.619 1.51e-87 256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1488 11 29385825 29389632 Acco11g1488 11 29385825 29389632 ECH