Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1419 ATGGCAGCGACCAGGGTTTTCGGAGCATGTAGTAGAGCATTGATGGCGGCGGTGGCGAAGGGGGCTGCGTCCGGTGTTAAGACTGCTGCGAAGACGGCCACACCAAAAAGAGGCAACGCCTTACAGAAGATGATCCCTGTCTCTCCGCAGCTCGGCAGGTTTCTCGGTGCCTCTGAAGCTTCACGCACCGATGCTGTCAAGAAAGTGTGGGAGCACATCAAACTTCACAACCTTCAGAATCCTGCAAACAAAAAGGAAATTGTTTGCGATGAGAAGTTGAAGACCATTTTTGGTGGGAAAGATAAAATATCGTTCACAGAGATTGCCAGATGTCTGTCTAACCATTTTGTGAAATCGGCCTAA 363 0.4959 MAATRVFGACSRALMAAVAKGAASGVKTAAKTATPKRGNALQKMIPVSPQLGRFLGASEASRTDAVKKVWEHIKLHNLQNPANKKEIVCDEKLKTIFGGKDKISFTEIARCLSNHFVKSA 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1419 120 Gene3D SWIB/MDM2 domain 36 120 IPR036885 -
Acco11g1419 120 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 26 117 - -
Acco11g1419 120 SUPERFAMILY SWIB/MDM2 domain 34 118 IPR036885 -
Acco11g1419 120 SMART swib_2 41 120 IPR019835 -
Acco11g1419 120 ProSiteProfiles SWIB/MDM2 domain profile. 40 118 IPR003121 -
Acco11g1419 120 Pfam SWIB/MDM2 domain 45 116 IPR003121 -
Acco11g1419 120 CDD SWIB-MDM2_like 46 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1419 Acco-ChrAcco11 28689737 28691342 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Acco11g1419 SWIB 1.1e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1419 11 28689737 28691342 Acco11g1419 11 28689737 28691342 ECH