Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1280 ATGTCGATAAGATGTGGAGTCGAGTCTGCTTTGCTCCACAGCAAAGTGCTCTCCTACAAACAACGGTTAGTTAGATTCTACTATGCTGCTTCTTCGGCAGTGATGTTGGAAGACCATGTGTTTGATGAAAGTCCTAGAGTAGATTATGCCAATGTAATGGTCAATTTTGGAAGAAATAGTATGAGAGTTTCAAGTCTTAAAAGAAAGGGAAGCTTATTTCCTATAGTGGTCTGGGTGATTAAAACCTCAAATTGGGTGACTGAACCAGCAAGATATAGATTGTTCTGGAAAGCTGTAAGGCGGTATGGATTTTCTCATTCAATCACTTGCTTTAAAATTATTATTCACTTATATGCATCTGAAGGAATGCATATGGAAGTATTTGCTTTGCTCAAAGATATTGTTGGATTCTATAGGAAGGCCAAGTTTGACACATTCAAATTGTTTTCAACTTTGTTAGATTCACCTCAGCATGTGGAACGATCCATTGTTGTGTATGACATATTAATAAAAGTACTTGCATCGTTTAAAATGCTTGATGACGCATTTGACGTGTTCATGAGAATTAAGCACATGGGATTTGAAGCTGATGTTTTGTCGTGCAATTTCTTGTTGAAATGCTTGGTGGAAAGAAATAGGGTGGAGTTGGTTGGAAAATTATTTCAAGAGTTAAAAGTCTCAGGCCCATCACCAAATGTCTACACCTATACAATTATGATGAGCTTCTACTGTAGTGGAGATTGTGGGCAGGATGTAGATATTAACCAAGCTACTGCGATTTTTGAAGAAATATTGAGGAGTGGGGAAAACCCAACTGTTGTAACATATAGTATTTATATCCGTGGACTTTGCAAACTTGGTTCTGCTGCTGCTGCTCTGCGATTCATTCGTGAATGCAGGTATAGAAACCAGCCTCTCAATAGCTATTGTTTTAATGCTGTAATTTATGAATTTTGTCAAAGAGGTGCTGTTGATGAAGCTTTGCAACTCTTGCAAGAAATGCGGAGCTCAGGGGTATTGCCTGATGCTTGTAGCTACAGTATTTTAATCCATGCATTCTGTAAAAATGGGGATATTGATAAAGGTATTGACTTGATTGAGGAAATGGAACTTTATAATATAAAACCATCCATAATTAGTTACACTTCCCTTATCTATGGTCTGTGCAAGAGCAAGCTGATGGAATTTTCAATGTGTGTGTTTCGGAATATTGGTGCTTCTGGATACAAATATGATCAGGCTGCTTATGAAACTCTGCTTAGTGGATTTTGCCATCAAGGTGATATAGATTCTGCCATTGAGCTTATGGAGGAGATGATTACAAATGAGCTGGCTCCTACTTCTTTTGGTTTCCAAAGTATAATTGGAGCGTTCTACAAACTGGGACTCTTAGACAAGGCATTGGAAGTTCTAAATTCCATGCTACAAGATGGTGTCTTGCCAAATACCATCACATGCAATTTTATTATCGATGGACTTTGCAGAGAAAGCCGGTTTGTGGAAGCTTTAACACTACTGGATGTGTTCCAAGACCATGGAATTGACGTAAACTCTCATTCATATAACGCTGTAATCTACAGGCTTTGCAAAGGAAGCCATTTAGAAAGGGCATGGGAGCTCCTTCCCAGAATGATGAAAAGGAATGTACTTCCAGGAGTTGTTATTTACACAACTCTCATAGATGCTTTTGCCAAACAATCTTATCTAAAGAAGGCCTTATGGTTATACACAAAAATGCCCAAAGTTGGAGTCACTCCCAACACCATCACTTATACAGTCCTCATTAACATCTTTTGCCGTTTGGGCAAAATGCGTGAAGCATTTATTTTTTTCAAGAAAATGGTAGAAGATGGCTTGAATCCAGATCAGATTTCATATACATCTTTAACAGCTGGTTTTTGTAGAAATGGAGATATGGGAAAGGCTTGGGTAGTATTCCAAGAAATGTTGAGGAAAGGCCTCTTGCCTGATGTATTTTCCTACACCTGTTTGATAGATGGGTTTTGCAAGTTAAACCGGATAGATAAAGCCTCTCTTCTGTTTGATGAAATGAACAGAAAAGCAGTTGCTCCTAATGTTGTCACTTACACTGTTCTCATTGCTTGGTACCGTAAACGTGGATATGCAGATCAGGCACATAGGTTATATAATGAAATGAGGCTAAAGGGTATTTCACCAGATGATATAACTCATACAGTTATTTTTAAAGGCGGCAGAGCAGAAGCTAAGGTTCCATAA 2238 0.3829 MSIRCGVESALLHSKVLSYKQRLVRFYYAASSAVMLEDHVFDESPRVDYANVMVNFGRNSMRVSSLKRKGSLFPIVVWVIKTSNWVTEPARYRLFWKAVRRYGFSHSITCFKIIIHLYASEGMHMEVFALLKDIVGFYRKAKFDTFKLFSTLLDSPQHVERSIVVYDILIKVLASFKMLDDAFDVFMRIKHMGFEADVLSCNFLLKCLVERNRVELVGKLFQELKVSGPSPNVYTYTIMMSFYCSGDCGQDVDINQATAIFEEILRSGENPTVVTYSIYIRGLCKLGSAAAALRFIRECRYRNQPLNSYCFNAVIYEFCQRGAVDEALQLLQEMRSSGVLPDACSYSILIHAFCKNGDIDKGIDLIEEMELYNIKPSIISYTSLIYGLCKSKLMEFSMCVFRNIGASGYKYDQAAYETLLSGFCHQGDIDSAIELMEEMITNELAPTSFGFQSIIGAFYKLGLLDKALEVLNSMLQDGVLPNTITCNFIIDGLCRESRFVEALTLLDVFQDHGIDVNSHSYNAVIYRLCKGSHLERAWELLPRMMKRNVLPGVVIYTTLIDAFAKQSYLKKALWLYTKMPKVGVTPNTITYTVLINIFCRLGKMREAFIFFKKMVEDGLNPDQISYTSLTAGFCRNGDMGKAWVVFQEMLRKGLLPDVFSYTCLIDGFCKLNRIDKASLLFDEMNRKAVAPNVVTYTVLIAWYRKRGYADQAHRLYNEMRLKGISPDDITHTVIFKGGRAEAKVP 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1280 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 586 IPR002885 -
Acco11g1280 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 271 IPR002885 -
Acco11g1280 745 Pfam PPR repeat 379 403 IPR002885 -
Acco11g1280 745 Pfam PPR repeat 164 194 IPR002885 -
Acco11g1280 745 Pfam PPR repeat 274 300 IPR002885 -
Acco11g1280 745 Pfam PPR repeat 453 479 IPR002885 -
Acco11g1280 745 Pfam PPR repeat 554 584 IPR002885 -
Acco11g1280 745 NCBIfam pentatricopeptide repeat 659 692 IPR002885 -
Acco11g1280 745 NCBIfam pentatricopeptide repeat 554 588 IPR002885 -
Acco11g1280 745 NCBIfam pentatricopeptide repeat 452 483 IPR002885 -
Acco11g1280 745 NCBIfam pentatricopeptide repeat 694 727 IPR002885 -
Acco11g1280 745 NCBIfam pentatricopeptide repeat 345 377 IPR002885 -
Acco11g1280 745 NCBIfam pentatricopeptide repeat 519 552 IPR002885 -
Acco11g1280 745 NCBIfam pentatricopeptide repeat 164 198 IPR002885 -
Acco11g1280 745 NCBIfam pentatricopeptide repeat 415 447 IPR002885 -
Acco11g1280 745 NCBIfam pentatricopeptide repeat 484 517 IPR002885 -
Acco11g1280 745 NCBIfam pentatricopeptide repeat 624 658 IPR002885 -
Acco11g1280 745 NCBIfam pentatricopeptide repeat 589 622 IPR002885 -
Acco11g1280 745 NCBIfam pentatricopeptide repeat 309 343 IPR002885 -
Acco11g1280 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Acco11g1280 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 692 726 IPR002885 -
Acco11g1280 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Acco11g1280 745 SUPERFAMILY TPR-like 304 652 IPR011990 GO:0005515
Acco11g1280 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Acco11g1280 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 587 621 IPR002885 -
Acco11g1280 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Acco11g1280 745 Pfam PPR repeat family 586 635 IPR002885 -
Acco11g1280 745 Pfam PPR repeat family 656 700 IPR002885 -
Acco11g1280 745 Pfam PPR repeat family 481 530 IPR002885 -
Acco11g1280 745 Pfam PPR repeat family 307 355 IPR002885 -
Acco11g1280 745 Pfam PPR repeat family 197 245 IPR002885 -
Acco11g1280 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Acco11g1280 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 657 691 IPR002885 -
Acco11g1280 745 Pfam PPR repeat 408 439 IPR002885 -
Acco11g1280 745 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 512 735 - -
Acco11g1280 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Acco11g1280 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 622 656 IPR002885 -
Acco11g1280 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Acco11g1280 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Acco11g1280 745 Gene3D Tetratricopeptide repeat domain 614 686 IPR011990 GO:0005515
Acco11g1280 745 Gene3D Tetratricopeptide repeat domain 370 442 IPR011990 GO:0005515
Acco11g1280 745 Gene3D Tetratricopeptide repeat domain 90 223 IPR011990 GO:0005515
Acco11g1280 745 Gene3D Tetratricopeptide repeat domain 443 509 IPR011990 GO:0005515
Acco11g1280 745 Gene3D Tetratricopeptide repeat domain 687 743 IPR011990 GO:0005515
Acco11g1280 745 Gene3D Tetratricopeptide repeat domain 510 613 IPR011990 GO:0005515
Acco11g1280 745 Gene3D Tetratricopeptide repeat domain 224 369 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1280 254 744 Glycosyltransferase AT1G05670 29.567 2.28e-69 240
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1280 11 26882493 26884730 Acco11g1280 11 26882493 26884730 ECH