Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1254 ATGGAGATCCAGCCTCCTGAAATCCTCCCACCTAGATTTTCTGATTCTTTTCTTGGCGGAGTACCCTTGGGCGGCGCTTCAACGATTTCAGAAATTTCGGTTTCAGAGGGAGCTCCAATCGGGTCTTCATCGTCTTCGCATTCTGGGAATCTTGATGACCGTTCTTTGGTTCCTTATGTACCAAATCAGATGGGAGTTTCAGCGTCTTTATCCAGTGAAGCCGAAGAGGAGGGGATCAATCCTTCTTTACCATCCAATATAATTGTTTCTCATCCCTATTTAGGTTCCAAAACCCTAGACGAGTGTTCACCTTCTGCGTCAATAGAAATCACAGCGCCTTTGGTGCCTCAGTCATCAACTCTCGAACAGTCGTCACTGCACATGGCAACGAAGGCCGAGAATAATTATTGCCTCCCGTTCTGTGATTCCGGTAGGGAAGATCGAGATGATGTTCCAGAGCCAATTCGATCGGGAAACAATTTATCATATTATTCGGCTGCATCATCCCCCAAGCATTGGGCTTCGTGGCCCTCTTCTTCACAGCTTCCCTTCAAAGAAACTTGGGATCCCGAGCTTACTTCCGATCAAATATTGGTTCCATCTGAAGATACTGGCACGCCTTTGTACAATGGATTTAATGTTTCCGGAATTGTACCCTTCACGGTGGGTGCTGGGCTTGAAAATCTTGGAAACACATGCTTTTTCAATGTTATCTTGCAATGCCTTACACATACCGTGCCACTAATTCAGGGTCTTTCTACTTGCAGTCATACTGCGCCTTGTGAAAGTGGTATTGATGGATTCTGTGTTCTCTGTGTTCTTCGTGATCACATTGAACTCTCGTTGAAGTCTGCTGGAAGAATTCTCTCACCTTTGAAACTTGTTGACAATTTGAATTCTTCAGTGGATGATTACTTTATAATTCAAGATGCTGTTATCCATGACCTGTTATCAGATTTTTCTTCTTTTTTTACAAGATACCAGCAGGAAGATGCCCATGAGTTCCTGCAGTGCTTCTTGGATAAACTGGAAAGATGCTTTCTAGATTTAAAGAGAAATGGCCAGAATTGTGAACAAGCTGACAATCTAGTGGAAACAATATTTGGAGGTCGTCTCATCAGCAAACTTCAATGTTGTAATTGTGGTCACTGTTCGGACACATATGAGCCTCTCATTGACTTTAGCTTGGAGATAGATAATGTGGACAGCCTTCCAAGTGCTTTGGCATCATTCACTAAGGTAGAACAGATAGATGCTAAGATTACATGTGATAGCTGCAAGGAAGAAGTATCCATGGAGAAGAGGCTTGTTTTGGATCAGACACCTTCAGTTGCAGCATTTCATTTAAAGAGATTTAAGACAGATGGGATATATGTTGAAAAGATTGATAATCATGTGGATTTCCCTCTAGAACTGGACTTACACCCTTATACCAATTGTAATGAAGCACTGAAGTATGACCTGTATGCCATTGTTGTACATGTTGGGTTTTCATCTACTTCTGGGCATTACTTTTGCTTTGTCCGCACTGCACCTGACATGTGGTATAGGTTGGATGACTCCAAGGTTACTAGAGTCGCAAGAGATTTTGTGCTGTCTCAGGAAGCATACATATTACTCTATGCTCGACAGGGCACACCATGGCTATCTTCAATAATGGATGCTTCAAGTCCATGCTTGGTTCCAAGTGTCCTTAATACTTCTCCAAAGTCTGTTTTAGACAATGTTGATGGCTTGTATTGCCGTAATCCTAGTGAAGCAGATTTGGCAAGTGGTGGTACAAATGAATGCCAAGGAGTTTCTCAGCAGACGGCTGCTTATTCTAGGGGAGGATTTAATGAAATGCTCAACGATTATATGGATTCTCATGTTGAAGATGATCAAGTTCACTTTGAGATAAATCCAACTAGTGTTAGTTCTAACAGCACTAAAGAAGAAACCACCCATGTCCAAGTGCCATGCAATGAGAAAAATGGTTCCCTGTCCTCACTTGATGAAAAAGATAATCAGGAGACTGTTAATATTAGGGAGAGTGATGTTTTCCGCCCCTTGACTCCACCAAGCTCCCCAGGTCCAGAGTCTAATTCTCCAGATGTTGCTTGCCACAATCCTCGCGGTCATTTGAAGATGGAGAATCATGAGAGGTGTCAGAAACCATTAAACAAGACAGATGATGATTCTGAGAGGAAAGAAGCTATGAGATATCTTAGCAAGAATGTGCATAGTTCGAGGAGATCAAAACTGCTGGGTGCAATGTCTGCTGAAAGTTATTCTATCAAAAAGAGGAAGAAATTGAGTTCTCTATGTAAGAAATCCATGCCTCCTGGTGACCGTAAGAAATCAAGTCATGGCTCTGTCATGTGTGCTTCGAGGTAA 2376 0.4238 MEIQPPEILPPRFSDSFLGGVPLGGASTISEISVSEGAPIGSSSSSHSGNLDDRSLVPYVPNQMGVSASLSSEAEEEGINPSLPSNIIVSHPYLGSKTLDECSPSASIEITAPLVPQSSTLEQSSLHMATKAENNYCLPFCDSGREDRDDVPEPIRSGNNLSYYSAASSPKHWASWPSSSQLPFKETWDPELTSDQILVPSEDTGTPLYNGFNVSGIVPFTVGAGLENLGNTCFFNVILQCLTHTVPLIQGLSTCSHTAPCESGIDGFCVLCVLRDHIELSLKSAGRILSPLKLVDNLNSSVDDYFIIQDAVIHDLLSDFSSFFTRYQQEDAHEFLQCFLDKLERCFLDLKRNGQNCEQADNLVETIFGGRLISKLQCCNCGHCSDTYEPLIDFSLEIDNVDSLPSALASFTKVEQIDAKITCDSCKEEVSMEKRLVLDQTPSVAAFHLKRFKTDGIYVEKIDNHVDFPLELDLHPYTNCNEALKYDLYAIVVHVGFSSTSGHYFCFVRTAPDMWYRLDDSKVTRVARDFVLSQEAYILLYARQGTPWLSSIMDASSPCLVPSVLNTSPKSVLDNVDGLYCRNPSEADLASGGTNECQGVSQQTAAYSRGGFNEMLNDYMDSHVEDDQVHFEINPTSVSSNSTKEETTHVQVPCNEKNGSLSSLDEKDNQETVNIRESDVFRPLTPPSSPGPESNSPDVACHNPRGHLKMENHERCQKPLNKTDDDSERKEAMRYLSKNVHSSRRSKLLGAMSAESYSIKKRKKLSSLCKKSMPPGDRKKSSHGSVMCASR 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1254 791 MobiDBLite consensus disorder prediction 765 791 - -
Acco11g1254 791 Gene3D Cysteine proteinases 223 546 - -
Acco11g1254 791 MobiDBLite consensus disorder prediction 635 730 - -
Acco11g1254 791 FunFam Ubiquitin carboxyl-terminal hydrolase 20 300 547 - -
Acco11g1254 791 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 486 504 IPR018200 GO:0004843|GO:0006511
Acco11g1254 791 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 224 544 IPR028889 -
Acco11g1254 791 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 225 240 IPR018200 GO:0004843|GO:0006511
Acco11g1254 791 Pfam Ubiquitin carboxyl-terminal hydrolase 225 541 IPR001394 GO:0004843|GO:0016579
Acco11g1254 791 SUPERFAMILY Cysteine proteinases 223 543 IPR038765 -
Acco11g1254 791 MobiDBLite consensus disorder prediction 635 660 - -
Acco11g1254 791 MobiDBLite consensus disorder prediction 704 730 - -
Acco11g1254 791 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 132 544 - -
Acco11g1254 791 MobiDBLite consensus disorder prediction 661 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1254 Acco-ChrAcco11 26419002 26422585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1254 225 574 Miscellaneous Gene Families AT4G31670 33.425 1.57e-47 177
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1254 11 26419002 26422585 Acco11g1254 11 26419002 26422585 ECH