Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1013 ATGGCGGATTCCGCCGATTCTCCTGCCATTCCAGAAGCCAACCCGCAGAAAGCTGATTCGGGTGCTCCCAATTCGCATCAGAACCAACCCGATCCGGTTCATCACTCCGCTGCCCCGGCAATACAACCTCCGCCATCATCTTCTGCGCCCGTCGGGGCGGTAAACCCTAACTCGAACCCATCAGTAATGCCCATGCCACCTCCGCCGCCTCCTTCTATATCATATGGGGCGGCGGGGGCGGCACCTCAAGTCTCAGGCGGTGCCGTTGCCCCTCCGGTCGTGCCATCCTTCAGGCCAGTAGCTCCGCAGACTCCCCTGTTTTCTCCAATGCCTAACGCCATTAACTATCAAAATCCAGCCGTTCAGCCGCCCGGTGTAAGCTCTGCCTCCCCAATGACTCCTGGTGTGGCTAGTGGTGCCGGAGCGGGTCCAGTGCCAGTGCAGATGCAGCCAATGATGGTTCCTTATCAAATTCCTCCTGGTCAGCCTGCTAATCCGGCCTTGAGACCCTTTGCACCGATGCCCAATGGTTATACAGCCTTTCCAGGAGCTCCGCAAGGGACCATGCCTCCACCGGGAATGCCTCGGTATCCACCTCCTTATGGAACTATGGTTCGTCCTTCATTTCCTCCTCGCCCCCCTGGAGCTGTTAATGTGCTTCCAGCTGCATCACGCCCTCCTGTTGCAGGGATCCCTCCTGTTCGCCCTGTCATTCCACCTGTGGTTAGACCAGTGGTTGCTCCTAGTATTACACCAGCTGATAAACCGCAAACTACAGTTTATATTGGAAAAATTGCATCAACAGTGGAAAATGAATTTATGCTTTCATTACTTCAGTTATGCGGACCTATCAAGAGCTGGAAACGCCCTCAAAATCCAACAAGTGGAACTCCTTTAAGCTTTGGATTTTGGGAGTTTGAGTCTGCTGAAGGTGTCCTCCGTGCATTGCGTCTGCTCAATAAATTGAATGTTGATGGGCAAGAATTAACGGTCAATCCTAATGATGCGACAAAAGAATATCTGGAGAAGTATGTTAAGAAGAAAAATGAGAACTTGCAAAAGGATACTCAGGCTGTTGGATCTGAGAAAGATGATGAGAGTGCCAAACCTTTGAATGCAAAAGAGGAGGGAAAGCCTGATGACTTGAAGAAGGAGGATAGTAAGTCAGGGAACAAGGAAAATCATAATGTGACAAATCTCAGTATCATTAGTGATGCAGACAGGGAAGCTGATAGAGAGGCCTTAGAGAAGATTACAAACATGATAGAAGAGAGACTGAAGACAAGACCTTTACCTCCACCTCCTGCGCAGGCAGTTCCTGATGGCCTTGCAAACTCAGCTTTGGAACAACCTTCAAAAGGAAGAGATGGAGACTCTGATGCAGATACAGTGAATAATGAAGCAGGTGATGATAAAAATGACAAGGAGACAAATAGTGAGAACAAAGCAACCAGTGAACATGATAGGCCTGAGACCCCTGATAGAAGGCATGATAGGAGGAGCAGAGAAAGAGACCGAGATAGAGAACTAAAACGAGAAAAGGATAGGGAACTTGAGAGATATGAAAGAGAAGCAGAGCGGGAACGCATTAGGAAAGAGAGGGAACAAAGGAGGAGGATTGAGGAGGCTGAGCGCCAATATGAAGCATGTTTGAAGGATTGGGAGTATAGAGAAAGAGAGAGAGAGAAAGAACGTCAATATGAGAAGGAGAAGGAGAAAGAACGGGAGCGCAAACGTAGAAAGGAGATACTTTATGATGAAGATGAAGAGGACGATGATTCAAAGAAGAGGTGGCGCAGAAGTGTGTTAGATGAGAAACGAAAGAAAAGATTGCATGAAAAGGAAGAGGACCTGGCTGACAGACAAAAGGAAGAGGAAGAAATTGCTGAGGCCAAAAGGAGGGCTGAGGAGGATCAACTGTTGAAGCAGCAGAGAGATGCACTGAGGCTATTTTCTGAGCTTGTGAGTGGCGGTGAAAAAAGTATGGCTACTGAGGATATGACTAATCAAGCCAAAAATATTGTTGCTGAACAAGACACTATGGCTGACCATGGTTATGAAGTCCATACAGGTGATGTTAATCCACTAAATGGCATCAATGATGAAACCATGGGATCAGTTGCTGTTTCTGATGCACGACAGAGTGGCAATGCCCCTTCTAAGAAGTTGGGTTTTGGTTTGGTTGGTTCTGGGAAAAGAACTACTGTTCCTTCTGTCTTCCATGAGGAGGAGGAGGATGATGCAGACAAGGATAAAAAGATGAGGCCTCTGGTTCCAATTGATTACTCAACTGAAGAACTACAGGCTGTTCAACCAACTGTTTCTGGGGCCCCACCTGCAAATTTGGCTGCAGCTGCAGAATTTGCTAAGCGTTTATCCTCCGTCAACATCAAGGAAGATAAGGTAGATGGAGAGTGGAATAGAAGTAGGCGTTTTAATGATAGGGCTAACCACCGAGATAGGGACAGGAATGATGAAGATGGCTCTCACAACAAAGATGAAAGCAGGGAAAAGACTTCTGATCGTGAAAGGGATCGAGATCGTGGGTCACAGAAAGTAAAGACATCAGATAATAAAAAGCTATTTGATGCAAAACAGTTGATTGATATGATACCAAAGACCAAAGATGAGCTCTTCTCATATGAGATAAATTGGGCAGTGTATGATAAGCACCGGCTGCATGAAAGAATGAGACCTTGGATATCAAAGAAGATCACAGAGTTCTTGGGGGAAGAAGAAACGACATTGGTAGATTACATAGTTTCAAGTACGCAGGAACATGTGAAAGCATCCCAGATGCTGGAGCTGCTTCAATCCATTTTAGACGAAGAAGCTGAAATGTTCGTTCTGAAGATGTGGAGGATGCTTATTTTTGAAATAAAGAAGGTAGAGACAGGCAATGCTTTGAGATCAAAATCTTGA 2922 0.4644 MADSADSPAIPEANPQKADSGAPNSHQNQPDPVHHSAAPAIQPPPSSSAPVGAVNPNSNPSVMPMPPPPPPSISYGAAGAAPQVSGGAVAPPVVPSFRPVAPQTPLFSPMPNAINYQNPAVQPPGVSSASPMTPGVASGAGAGPVPVQMQPMMVPYQIPPGQPANPALRPFAPMPNGYTAFPGAPQGTMPPPGMPRYPPPYGTMVRPSFPPRPPGAVNVLPAASRPPVAGIPPVRPVIPPVVRPVVAPSITPADKPQTTVYIGKIASTVENEFMLSLLQLCGPIKSWKRPQNPTSGTPLSFGFWEFESAEGVLRALRLLNKLNVDGQELTVNPNDATKEYLEKYVKKKNENLQKDTQAVGSEKDDESAKPLNAKEEGKPDDLKKEDSKSGNKENHNVTNLSIISDADREADREALEKITNMIEERLKTRPLPPPPAQAVPDGLANSALEQPSKGRDGDSDADTVNNEAGDDKNDKETNSENKATSEHDRPETPDRRHDRRSRERDRDRELKREKDRELERYEREAERERIRKEREQRRRIEEAERQYEACLKDWEYREREREKERQYEKEKEKERERKRRKEILYDEDEEDDDSKKRWRRSVLDEKRKKRLHEKEEDLADRQKEEEEIAEAKRRAEEDQLLKQQRDALRLFSELVSGGEKSMATEDMTNQAKNIVAEQDTMADHGYEVHTGDVNPLNGINDETMGSVAVSDARQSGNAPSKKLGFGLVGSGKRTTVPSVFHEEEEDDADKDKKMRPLVPIDYSTEELQAVQPTVSGAPPANLAAAAEFAKRLSSVNIKEDKVDGEWNRSRRFNDRANHRDRDRNDEDGSHNKDESREKTSDRERDRDRGSQKVKTSDNKKLFDAKQLIDMIPKTKDELFSYEINWAVYDKHRLHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVETGNALRSKS 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1013 973 Coils Coil 556 591 - -
Acco11g1013 973 MobiDBLite consensus disorder prediction 351 392 - -
Acco11g1013 973 SUPERFAMILY PWI domain 894 960 IPR036483 GO:0006397
Acco11g1013 973 Gene3D - 251 366 IPR012677 -
Acco11g1013 973 Pfam PWI domain 896 959 IPR002483 GO:0006397
Acco11g1013 973 MobiDBLite consensus disorder prediction 453 542 - -
Acco11g1013 973 ProSiteProfiles PWI domain profile. 876 973 IPR002483 GO:0006397
Acco11g1013 973 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 336 IPR000504 GO:0003723
Acco11g1013 973 MobiDBLite consensus disorder prediction 558 596 - -
Acco11g1013 973 Coils Coil 612 641 - -
Acco11g1013 973 Coils Coil 504 553 - -
Acco11g1013 973 Gene3D PWI domain 852 967 - -
Acco11g1013 973 SMART pwi_2 889 962 IPR002483 GO:0006397
Acco11g1013 973 MobiDBLite consensus disorder prediction 817 856 - -
Acco11g1013 973 SUPERFAMILY RNA-binding domain, RBD 192 333 IPR035979 GO:0003676
Acco11g1013 973 SMART rrm1_1 259 332 IPR000504 GO:0003723
Acco11g1013 973 MobiDBLite consensus disorder prediction 1 81 - -
Acco11g1013 973 MobiDBLite consensus disorder prediction 351 409 - -
Acco11g1013 973 MobiDBLite consensus disorder prediction 421 542 - -
Acco11g1013 973 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 24 973 - -
Acco11g1013 973 MobiDBLite consensus disorder prediction 60 75 - -
Acco11g1013 973 FunFam RNA Binding Motif protein homolog 852 968 - -
Acco11g1013 973 MobiDBLite consensus disorder prediction 18 32 - -
Acco11g1013 973 MobiDBLite consensus disorder prediction 609 639 - -
Acco11g1013 973 MobiDBLite consensus disorder prediction 737 755 - -
Acco11g1013 973 CDD RRM_RBM25 258 341 IPR034268 -
Acco11g1013 973 MobiDBLite consensus disorder prediction 736 755 - -
Acco11g1013 973 MobiDBLite consensus disorder prediction 708 729 - -
Acco11g1013 973 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 260 329 IPR000504 GO:0003723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1013 11 22260391 22269555 Acco11g1013 11 22260391 22269555 ECH