Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1000 ATGGCCGAAGATAGCGTCGTTGAGTCTTGCGATTTGCCGGTGAAGAGGCAGAGGGAAGAAGAAGGGGAAGAGAATGGGGTTTCTGCTTCTCCTGTTTCCATGGAGACAGACCTGAATTGTGGCAAGCTTCCTAATTTTATGTCTTCAGTGATTCCTGGATGGTTCTCTGAAATTAGCTCAATGTGGCCTGGAGAGGCGCACTCTTTAAAAGTTGAAAAGATCTTATTTCAAGGGAAGTCTGATTACCAGAATGTGATGGTCTTCCAGTCATCATCATACGGAAAGGTTCTTGTTTTGGATGGTGTAATTCAGCTCACTGAAAGAGATGAATGTGCCTACCAGGAAATGATCACACATCTTCCTCTGTGCTCAATTCCGAATCCCAAAAAGGTTTTGGTTATTGGTGGGGGAGATGGTGGAGTCTTGCGGGAAGTCGCACGGCATTCTTTAGTCGAGAAGATAGACATTTGCGAAATTGACAAAATGGTTGTTGATGTCTCCAAACAATTTTTCCCTGATGTAGCTGTAGGGTTTGATGATCCACGTGTGACACTTAACATTGGTGATGGAGTTGCTTTTTTGAGAGATGTTCCAACAGGAACTTATGATGCAGTCATAGTTGACTCATCGGACCCTATAGGTCCTGCTCAGGAGCTTTTTGAAAAACCCTTTTTTGAGTTGGTTGCTAAGGCTCTTCGTCCTGGAGGAGTTGTGAGCACTCAAGCTGAAAGTATATGGCTTCATATGCATATTATTGAGGGCATTGTCAATAATTGTCGCCAGATATTTAAAGGCTCCGTTGAATATGCTTGGACTTCAGTTCCCACATACCCTAGTGGGGTAATCGGTTTTATGCTTTGCTCGACCGAAGGACCTCCTGTTGATTTCAAGCATCCGTTGAACTCCATAGATGCAAATGATAGTCATCAGCAATCAGAAAGGCCACTGAAGTTTTACAACTCTGAGATTCATGCGGCGGCATTTTGCCTTCCATCGTTTGCCAGTAGAGTGATTGATTCTAAAGTGAATTGA 1032 0.436 MAEDSVVESCDLPVKRQREEEGEENGVSASPVSMETDLNCGKLPNFMSSVIPGWFSEISSMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSSYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSLVEKIDICEIDKMVVDVSKQFFPDVAVGFDDPRVTLNIGDGVAFLRDVPTGTYDAVIVDSSDPIGPAQELFEKPFFELVAKALRPGGVVSTQAESIWLHMHIIEGIVNNCRQIFKGSVEYAWTSVPTYPSGVIGFMLCSTEGPPVDFKHPLNSIDANDSHQQSERPLKFYNSEIHAAAFCLPSFASRVIDSKVN 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1000 343 NCBIfam spermidine synthase 54 333 IPR001045 GO:0003824
Acco11g1000 343 MobiDBLite consensus disorder prediction 9 25 - -
Acco11g1000 343 FunFam Spermidine synthase 1 45 104 - -
Acco11g1000 343 Pfam Spermidine synthase tetramerisation domain 53 107 IPR035246 -
Acco11g1000 343 Gene3D Vaccinia Virus protein VP39 105 343 IPR029063 -
Acco11g1000 343 PIRSF Spermidine_synth 44 343 IPR030668 GO:0006595
Acco11g1000 343 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 52 289 IPR030374 -
Acco11g1000 343 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 131 144 IPR030373 -
Acco11g1000 343 MobiDBLite consensus disorder prediction 1 31 - -
Acco11g1000 343 Gene3D Spermidine synthase, tetramerisation domain 46 104 IPR037163 -
Acco11g1000 343 PANTHER SPERMIDINE/SPERMINE SYNTHASE 45 340 IPR001045 GO:0003824
Acco11g1000 343 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 50 339 IPR029063 -
Acco11g1000 343 CDD AdoMet_MTases 130 238 - -
Acco11g1000 343 FunFam Spermidine synthase 1 105 343 - -
Acco11g1000 343 Pfam Spermine/spermidine synthase domain 110 297 - -
Acco11g1000 343 Hamap Polyamine aminopropyltransferase [speE]. 53 339 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1000 Acco-ChrAcco11 22030171 22033495 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1000 11 22030171 22033495 Acco12g0687 12 6376919 6379720 CCT
Acco11g1000 11 22030171 22033495 Acco11g1000 11 22030171 22033495 ECH