Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2550 ATGGGAGTCCGTGAAGGTCTATGGGTTTTGACGATCACGTCACTGGGGTTAGGGATGTTGACTCTCCGGCGAGCGTTAGAGAAGAAGACAAATGGGTTCCAGCTCTTCAAGATTTCGTTTGAGATGGAGAGGTCTAGATCTAAGAGGAACTACTACTATGACCAAGAGTATGACTCAGAGACCTTGGCTAGGACCAGACCTCGGTATAATAACCACTATGCAAGTAGTACCCACCGTCATCGCGGTGGCGGCAGTGGTGCTCGACCTAAGGCGCAAGACTCATCTTTAACGGTGACCACAAGTTACCGCATTTTGTGCCACGATATCAAGGCTGGTGGAGTGATTGGCAAGTCAGGTAGCATTATAAAGTCTATTAGACAACACACCGGCGCGTGGATCAACGTGCACGAGCTGATCCCTGGCGATGAGGAGCGAATCATAGAGATTTCTGACACGCGCCGGCGAGACCCAGAAGGCCGAATGCCATCGTTCTCGCCGGCGCAGGAGGCTTTGTTGTTGATTCATGAGAGAATTCTTGAGAGCGATGCTGCGTTTGGGATTGGCGAAGAGGAGGAGGATTATGGCGGCAGGGGAGGCGGGAGCAGCAGCCGAGTCGCCACTAGACTGGTGGTGTCCAGAATGCATGTGGGGTGCTTGTTGGGCAAAGGAGGGAAGATTATTGAACAAATGAGAATTGAAACCAAGACACAGATTAGGATACTTCCTAGAGATCACAATCTACCTCGTTGTGTTTCCGTGTCAGAAGAAATTGTTCAGGTTGTAGGTGATGCAAATGCTGTAAAGAATGCTATAGTACTTATATCATCACGCTTGAGGGAAAGCCAACATCGTGACCGCAGTCATTTTCATGGACGAGCACATTCGCCAGAGCGTTTTTTCCCTCCAGATGATGATTATATACCTCATGGGGCGGCTCGTAGATCCTCTATGGATGGGGCAACTTTTGGATCACGAATATCTACTGCCAATATAAGAAGCAATAGCTATCAGTCATTAGGTTACACAGTGGAACCTGGGGCTCCTCCTGTAGCTGATGATGCACAACCCCTTTATGGTGAAGACCTCATTTTCCGGATTCTTTGTCCACTGGACAAAGTGGATCGTATTATAGGGGAATCAGAAGGATTTGTAGAGTTCCTTCAAACTGAAGTTGGTGTCGATGTTAAGGTAGATGATCACATGGTTGGTTCAGATGAGCAGATAATCGTAATTTCTTCAGATGAGGGTCCTGATGATGAGCTGTTCCCGGCTCAGGAAGCTTTGTTGCATATTCAAACACGCATTGTTGATCTTGAGCTGGATGATGATAACATTATAACCACTAGGCTTGTTGTTCCATCTTGTGACATTGATTGTTTAGATGGAAGAGATGTATCATTATTAGAGATAAGTAGACTCACTGGCACAAATATTCAAATTCTCCCCAGAGAGCAGTTACCTCCCTGTGTTGCAAAAAATGATGAGCTGGTCCAGATTGTAGGTGAGATCAAAGCAGCTCGAGAAGCTATTCTTGAGGTGACATCAAGACTAAAAAATTATTTGTACAGAGATTTCTTTCAAAGGGATGCAGCACCATCAACTGCCTCATTACCTAATACGGAGATATCTTCTTCCAGTAACATAGCTCTAGTTCATGAGGCTTACACTGGCACTGAAACTCCCATAACCTATCAGAATGTGCAACCCGTGGCAGCGGCACTTCCCTTAAAAGAAACGGGAGGATCTAGCACAGAGACAGGAAAGCTGAAAGAAGGTGATCGCCGTGATGATGTGATGAGTAGTTTGAATAGGATCCCTGTACCACTTGTCACTAGAAGTACACTTGAAGTGGTCATACCGGAGTACGCAGTTCCAAAGCTTATAGCAAAGTCCAAAAGCAAGCTTGCTCAGATAAGTGAGTTGTCTGGAGCCACTGTAACACTAGTAGAGGATAGGCCGGAGGAGACACAAAAGATTATTCGGATATCTGGTACTCCAGAGCAGGCAGAGAGAGCTCAGAGCTTGCTCCAAGGATTCATTTTGAGCACACAAGAAGATGGACCCTAA 2067 0.463 MGVREGLWVLTITSLGLGMLTLRRALEKKTNGFQLFKISFEMERSRSKRNYYYDQEYDSETLARTRPRYNNHYASSTHRHRGGGSGARPKAQDSSLTVTTSYRILCHDIKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALLLIHERILESDAAFGIGEEEEDYGGRGGGSSSRVATRLVVSRMHVGCLLGKGGKIIEQMRIETKTQIRILPRDHNLPRCVSVSEEIVQVVGDANAVKNAIVLISSRLRESQHRDRSHFHGRAHSPERFFPPDDDYIPHGAARRSSMDGATFGSRISTANIRSNSYQSLGYTVEPGAPPVADDAQPLYGEDLIFRILCPLDKVDRIIGESEGFVEFLQTEVGVDVKVDDHMVGSDEQIIVISSDEGPDDELFPAQEALLHIQTRIVDLELDDDNIITTRLVVPSCDIDCLDGRDVSLLEISRLTGTNIQILPREQLPPCVAKNDELVQIVGEIKAAREAILEVTSRLKNYLYRDFFQRDAAPSTASLPNTEISSSSNIALVHEAYTGTETPITYQNVQPVAAALPLKETGGSSTETGKLKEGDRRDDVMSSLNRIPVPLVTRSTLEVVIPEYAVPKLIAKSKSKLAQISELSGATVTLVEDRPEETQKIIRISGTPEQAERAQSLLQGFILSTQEDGP 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2550 688 Gene3D K Homology domain, type 1 98 181 IPR036612 GO:0003723
Acco10g2550 688 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 438 525 IPR036612 GO:0003723
Acco10g2550 688 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 98 150 IPR036612 GO:0003723
Acco10g2550 688 ProSiteProfiles Type-1 KH domain profile. 99 171 - -
Acco10g2550 688 Gene3D K Homology domain, type 1 201 283 IPR036612 GO:0003723
Acco10g2550 688 CDD KH-I_PEPPER_rpt1_like 361 429 - -
Acco10g2550 688 Gene3D K Homology domain, type 1 611 683 IPR036612 GO:0003723
Acco10g2550 688 Pfam KH domain 207 275 IPR004088 GO:0003723
Acco10g2550 688 Pfam KH domain 102 150 IPR004088 GO:0003723
Acco10g2550 688 Pfam KH domain 614 677 IPR004088 GO:0003723
Acco10g2550 688 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 202 285 IPR036612 GO:0003723
Acco10g2550 688 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 355 415 IPR036612 GO:0003723
Acco10g2550 688 SMART kh_6 444 518 IPR004087 GO:0003676
Acco10g2550 688 SMART kh_6 611 681 IPR004087 GO:0003676
Acco10g2550 688 SMART kh_6 98 179 IPR004087 GO:0003676
Acco10g2550 688 SMART kh_6 203 279 IPR004087 GO:0003676
Acco10g2550 688 SMART kh_6 360 433 IPR004087 GO:0003676
Acco10g2550 688 ProSiteProfiles Type-1 KH domain profile. 361 428 - -
Acco10g2550 688 CDD KH-I_PEPPER_rpt2_like 207 279 - -
Acco10g2550 688 MobiDBLite consensus disorder prediction 578 597 - -
Acco10g2550 688 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 604 682 IPR036612 GO:0003723
Acco10g2550 688 ProSiteProfiles Type-1 KH domain profile. 612 676 - -
Acco10g2550 688 CDD KH-I_PEPPER_rpt1_like 99 172 - -
Acco10g2550 688 MobiDBLite consensus disorder prediction 72 94 - -
Acco10g2550 688 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 91 308 - -
Acco10g2550 688 ProSiteProfiles Type-1 KH domain profile. 204 274 - -
Acco10g2550 688 Gene3D - 361 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2550 Acco-ChrAcco10 36580340 36586452 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g2550 10 36580340 36586452 Acco10g2550 10 36580340 36586452 ECH