Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2501 ATGGCTACGTTTATAGTGCGTGAACGCCTGGACGGAGGGAGAAAACGACGTCGTCAAGGAGAAACATTCTGTGAACACCGTTCCATTTTGCGGCCACATTTCGGTTTAGAGGAAAGTTTCATCATGGCATCGAAGCGGATCTTGAAGGAACTCAAGGATTTGCAGAAGGATCCGCCTACTTCTTGCAGCGCCGGTCCTGTTGCCGAAGATATGTTTCATTGGCAAGCAACAATTATGGGTCCTCCTGATAGTCCTTATGCTGGAGGGGTTTTCCTAGTTACTATCCATTTTCCTCCAGATTACCCCTTTAAGCCACCCAAGGTTGCATTCAGGACGAAGGTATTCCACCCAAATATAAATAGCAATGGAAGCATTTGTCTTGACATATTGAAGGAACAATGGAGCCCTGCTTTAACTATTTCAAAGGTGTTACTATCTATTTGTTCCCTGTTGACGGACCCAAACCCTGATGATCCTTTGGTTCCTGAGATCGCCCACATGTACAAGACAGACAGGAACAAGTATGAATCAACTGCAAGAAGTTGGACCCAGAAATATGCTATGGGCTAA 570 0.4526 MATFIVRERLDGGRKRRRQGETFCEHRSILRPHFGLEESFIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYESTARSWTQKYAMG 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2501 189 CDD UBCc 44 183 IPR000608 -
Acco10g2501 189 SUPERFAMILY UBC-like 32 188 IPR016135 -
Acco10g2501 189 FunFam Ubiquitin-conjugating enzyme 28, E2 42 189 - -
Acco10g2501 189 Pfam Ubiquitin-conjugating enzyme 46 182 IPR000608 -
Acco10g2501 189 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 115 130 IPR023313 -
Acco10g2501 189 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 42 188 IPR000608 -
Acco10g2501 189 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 70 176 - -
Acco10g2501 189 Gene3D Ubiquitin Conjugating Enzyme 35 189 IPR016135 -
Acco10g2501 189 SMART ubc_7 45 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2501 Acco-ChrAcco10 36273207 36276626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2501 43 155 Miscellaneous Gene Families AT3G17000 36.975 5.94e-20 83.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g2501 10 36273207 36276626 Acco10g2501 10 36273207 36276626 ECH