Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2338 ATGGCGCTGGAATACTTCCCCGCTCTCCGCCATTTCCTTCGTCGTGTATGCTGGTTCTCTCAATCCCCTCCTTCACGCCCTGCCATACCTCTACGTTTAAACCTTTCTTTCTGTACTAACTGCCTTCTTTCCTCCAAATCCACCAGTCCCATCTCCAAAGTTTTGAAGCCCCGTGCCACTTCTAAAGAGAATTACGCGTTCTTTTTGAACAAAGATGAGCGCTTTGCGGAGCCTGTTGGTGCTGTTCATGATCTCTGTCGTGTTCGGAACACGAGCACAATTGCTGCCATTGTCACATCCCTGGGGGGTCCCCCTGGTGCCGTGGGTATCGTTCGACTTTCGGGACCTTCTGCTGTGGATATCGCTAGTCGAGTGTTTCGCCCTACCCGGAAAAGGAAGAAGAGTACGTGGCAACCCATTAGCCATGTTGTGGAGTATGGTATGGTGCTCGATACAGATGGGAATGTAATTGATGAGGTTTTAGTAGTTCCCATGTTAGCCCCGAGGTCTTACACTCGTGAAGACGTGATTGAGCTTCAATGTCATGGAAGTGAGGTGTGTCTACGCCGTGTATTGAGAACTTGTTTGGAAGCTGGAGCAAGACTTGCTGAATCAGGAGAATTTACTCTGCGTGCTTTTCTAAATGGTCGGTTAGATCTATCCCAAGCGGAAAATGTTGGAAGACTAATAACAGCTAAATCTGTTGCTGCTGCTGATGCAGCACTGGCAGGAATCCAGGGTGGTTTCTCTTCTCTTGTCAGGTCACTGAGAATACAGTGCATCGAGCTACTTACTGAGATTGAGGCTCGTTTAGATTTTGATGATGAGATGCCACCTCTAGATTTAAATTTATTAACGGATAAAATACATACTATGTCACAAGAAGTACAGGATGCACTGGAGACAGCTAATTATGACAAACTTCTTCAATCTGGATTACAGATTGCAATTGTTGGTCGTCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGAGCTATAGTTACGGAAATTGCTGGAACCACCCGGGATGTTATTGAAGCAAGTGTCACCATCAATGGTATTCCAATAACCTTGCTTGATACTGCAGGAATCAGGGATACTGATGACATTGTAGAAAAGATTGGTGTAGAGAGATCTGAAGCAGTCGCTATGGGAGCTGATTTGATTATCATGATTGTCAGTGCTGTTGAAGGGTGGACTTTGGAAGACACAAAACTTCTAGAAAGGATTCAATATAATAAGAGATCTGTGGTATCTTCCACCCCTGCAATTCTTGTGATCAACAAGACAGATTGTGCTCCTGGTACTGAGATTGGATGGGCCAAAGTATGTTCCAATTTTTTCAGCAAACATGTGTTTACTTGTGCTGTCACTGGTGAAGGACTACAGGAGTTAGAGAGGGTTGTGTTAGAGATAGTAGGTCTGAACAGCATTCCCACTGGAGGACGTAAATGGACGGTTAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCTTTGGAACGACTAAAAGCATCGATAGGGGAGAAACTACCTCTGGATTTTTGGACTATTGATTTAAGGGATGCAGCATTGGCGCTTGGGCAGATCAGTGGAGAAGATATGTCGGAAGAGGTTTTATCCAATATATTTAGCAAGTTCTGTATTGGTAAATAG 1680 0.4458 MALEYFPALRHFLRRVCWFSQSPPSRPAIPLRLNLSFCTNCLLSSKSTSPISKVLKPRATSKENYAFFLNKDERFAEPVGAVHDLCRVRNTSTIAAIVTSLGGPPGAVGIVRLSGPSAVDIASRVFRPTRKRKKSTWQPISHVVEYGMVLDTDGNVIDEVLVVPMLAPRSYTREDVIELQCHGSEVCLRRVLRTCLEAGARLAESGEFTLRAFLNGRLDLSQAENVGRLITAKSVAAADAALAGIQGGFSSLVRSLRIQCIELLTEIEARLDFDDEMPPLDLNLLTDKIHTMSQEVQDALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVTINGIPITLLDTAGIRDTDDIVEKIGVERSEAVAMGADLIIMIVSAVEGWTLEDTKLLERIQYNKRSVVSSTPAILVINKTDCAPGTEIGWAKVCSNFFSKHVFTCAVTGEGLQELERVVLEIVGLNSIPTGGRKWTVNQRQCEQLVRTKEALERLKASIGEKLPLDFWTIDLRDAALALGQISGEDMSEEVLSNIFSKFCIGK 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2338 559 NCBIfam small GTP-binding protein domain 313 437 IPR005225 GO:0005525
Acco10g2338 559 Pfam GTP-binding protein TrmE N-terminus 93 217 IPR018948 -
Acco10g2338 559 Pfam 50S ribosome-binding GTPase 314 435 IPR006073 GO:0005525
Acco10g2338 559 FunFam tRNA modification GTPase MnmE 88 217 - -
Acco10g2338 559 PANTHER TRNA MODIFICATION GTPASE GTPBP3 71 559 - -
Acco10g2338 559 Coils Coil 494 514 - -
Acco10g2338 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 475 IPR027417 -
Acco10g2338 559 Gene3D tRNA modification GTPase MnmE domain 2 218 559 IPR027368 -
Acco10g2338 559 CDD TrmE_N 92 216 IPR018948 -
Acco10g2338 559 CDD trmE 310 480 IPR031168 -
Acco10g2338 559 Gene3D - 313 487 IPR027417 -
Acco10g2338 559 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 312 480 IPR031168 -
Acco10g2338 559 Hamap tRNA modification GTPase MnmE [mnmE]. 92 559 IPR004520 GO:0003924|GO:0005525|GO:0006400
Acco10g2338 559 Pfam MnmE helical domain 220 556 IPR025867 -
Acco10g2338 559 FunFam tRNA modification GTPase MnmE 313 487 - -
Acco10g2338 559 Gene3D Probable tRNA modification gtpase trme; domain 1 81 217 IPR027266 GO:0005515
Acco10g2338 559 NCBIfam tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 106 559 IPR004520 GO:0003924|GO:0005525|GO:0006400
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2338 Acco-ChrAcco10 35137128 35142362 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g2338 10 35137128 35142362 Acco10g2338 10 35137128 35142362 ECH