Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2018 ATGGCTGTCGCATCAGCTAGAGTCCCGTTTGGATTTTCCGTTCACTGCAACCGGAAAGTGGACATTTCAAGTTCCGAGTTTCCTCTGAATGTGGACATTTCAAGAATTAGTTTGTACCCGAGCTCTCTGTCCTCCACAGCTTCAAAGGGTTCTGTTGGCCGCATATGTGCACGTCCTAATATCGATGATTTCAGCTGGGAGAAATTGCCAACGCCCATGCTTGACGCAATTGATAATCCTCTTTGTTTGAAGAACTTATCTTTTAAGGAACTCAAGCAGCTGGCCAGTGAAATTCGATTGGAATTGTCTTTGATGACGTTAGATGAACGCATTTCATTTGAGGCAAGTTTGGCAGTGGTGGAACTGACAATTGCAATACACCATGTTTTTCATGCTCCAGTGGACAAGATCTTGTGGGATGTTGGCGACCAAACATATGCACATAAGATTCTTACTGGAAGGAGACCCCTCATGAAAACAGTGAGGCAAAAGAATGGCCTTTCAGGCTTTACATCCCGATCTGAGAGTGAATATGATGCATTCAGTGCAGGTCATGGATGCAACAGCATTTCTGCTGGACTTGGCATGGCAGTTGCACGGGATCTGAAGGGGAGGCGAGAACGTGTAGTGTCAGTTATCAGCAATTGGACAACTATGGCTGGTCAGATTTATGAAGCCATGAGCAATGCAGGGTATTTAGACTCAGATATGATTGTGATTCTGAATGACTGCCGTCACTCTTTACATCCAAAAGTCGAGGAGGGGCCAAGGGCATCAATCAATGCATTATCTGGTACCCTAAGCAGGATCCAGTCCAGTAAATCCTTCCGAAGGTTTAGAGAAGTTGCTAAAGGTGTTACAAAGCGAATAGGGGGAGGTATGCATGAACTGGCAGCAAAAGTTGATGAATATGCACGTGGTATGATGGGTCCTCTTGGGTCCACACTTTTTGAAGAGCTTGGGTTGTACTACATTGGCCCTGTCGATGGACACAACATTGAGGAGCTAATTTGTGTTCTTAAACAAGTAGCATCTCTTGATTCAATGGGCCCTGTCCTGATTCATGTAGTAACTGGTGAAAACCATTTAGTGGAATATAATCAAAGTAATATGGCAGATGGGCAGCAGGATGGCTCTGGCAACTTTGATTCATTTCGTCAAGCTAGTAAACGTCGAACATATAGTGATTGCTTGGTGGAAACTTTGGTCATGGAAGCAGAGAAAGATAAAGATATTGTGTTAGTTCATGCAGGAATTACAACAGAACCATCACTTCAACTGTTTCGACAAAAAATGCCAGAAAAGTATTTTAATGTGGGTATGGCTGAGCAGCATGCAGTTACATTTGCATCTGGTTTGGCATGTGGGGGTTTGAAGCCGTTTTGCATGATACCTTCCTCCTTCCTTCAGAGAGCTTATGACCAGGTGATCCATGACGTTGATCAACAGAAAATTCCAGTGCGTTTTGTCATCACAAGTGCAGGTTTGGTTGGTTCTGATGGTCCCCTCCATTGTGGAGCATTCGATATAACGTTCATGTCATGCTTGCCAAATATGATAGTCATGGCACCATCTGATGAGGTTGAGCTTGCGAACATGGTGGCTACTGCTAGTCATGTCAATGACCGGCCAATTTGCTTCCGGTATCCAAGAGGTGCTTTAGTTAGCAGCAACTACACTGCATGCAATGGAGTACCACTTGAGATTGGAAAAGGGAGAGTTATTGTTGGTGGAAAAGATGTTGCTCTACTGGGATATGGATCAATGGTTCAGAACTGCCTAAACGCTTACGTACTTCTTTCAAAGCTAGGAATTGAGGTCACAGTTGCTGATGCCAGGTTCCGCAAGCCCCTGGACATCGATCTTCTCAGGCAGCTTTGTGAAAACCATTCCTTCCTGATTACTGTCGAGGAAGGATCTATTGGAGGATTTGGTTCCCATGTGGCCCAGTTTTTTGCTCTTGATGGACAGCTTGATGGAAAAATTAAGTGGCGACCTATTGTCTTACCGGACTGCTACATAGAGCATGCATCACCAAGTGAGCAGCTTGATCAGGCAGGACTGACCGGACACCACATTGCCGCCACGGCTTTGAGCTTGCTCGGCCGTCCCCGGGAAGCCCTTCATTTTATAATCCCGTGA 2142 0.4519 MAVASARVPFGFSVHCNRKVDISSSEFPLNVDISRISLYPSSLSSTASKGSVGRICARPNIDDFSWEKLPTPMLDAIDNPLCLKNLSFKELKQLASEIRLELSLMTLDERISFEASLAVVELTIAIHHVFHAPVDKILWDVGDQTYAHKILTGRRPLMKTVRQKNGLSGFTSRSESEYDAFSAGHGCNSISAGLGMAVARDLKGRRERVVSVISNWTTMAGQIYEAMSNAGYLDSDMIVILNDCRHSLHPKVEEGPRASINALSGTLSRIQSSKSFRRFREVAKGVTKRIGGGMHELAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIEELICVLKQVASLDSMGPVLIHVVTGENHLVEYNQSNMADGQQDGSGNFDSFRQASKRRTYSDCLVETLVMEAEKDKDIVLVHAGITTEPSLQLFRQKMPEKYFNVGMAEQHAVTFASGLACGGLKPFCMIPSSFLQRAYDQVIHDVDQQKIPVRFVITSAGLVGSDGPLHCGAFDITFMSCLPNMIVMAPSDEVELANMVATASHVNDRPICFRYPRGALVSSNYTACNGVPLEIGKGRVIVGGKDVALLGYGSMVQNCLNAYVLLSKLGIEVTVADARFRKPLDIDLLRQLCENHSFLITVEEGSIGGFGSHVAQFFALDGQLDGKIKWRPIVLPDCYIEHASPSEQLDQAGLTGHHIAATALSLLGRPREALHFIIP 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2018 713 Gene3D - 66 363 - -
Acco10g2018 713 SMART Transket_pyr_3 392 557 IPR005475 -
Acco10g2018 713 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 71 454 IPR029061 -
Acco10g2018 713 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 73 702 IPR005477 GO:0008661|GO:0016114
Acco10g2018 713 Gene3D - 570 701 IPR009014 GO:0003824
Acco10g2018 713 Pfam Transketolase, C-terminal domain 570 693 IPR033248 -
Acco10g2018 713 Pfam Transketolase, pyrimidine binding domain 393 554 IPR005475 -
Acco10g2018 713 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 42 708 IPR005477 GO:0008661|GO:0016114
Acco10g2018 713 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 391 559 - -
Acco10g2018 713 CDD TPP_PYR_DXS_TK_like 400 551 - -
Acco10g2018 713 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 570 702 - -
Acco10g2018 713 SUPERFAMILY TK C-terminal domain-like 565 701 IPR009014 GO:0003824
Acco10g2018 713 CDD TPP_DXS 113 358 IPR005477 GO:0008661|GO:0016114
Acco10g2018 713 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 76 699 IPR005477 GO:0008661|GO:0016114
Acco10g2018 713 Gene3D - 392 564 - -
Acco10g2018 713 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 388 554 IPR029061 -
Acco10g2018 713 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 74 358 IPR005477 GO:0008661|GO:0016114
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2018 Acco-ChrAcco10 32720459 32725943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2018 435 649 Acyl Lipid Metabolism Gene Families AT1G55510 23.932 2.33e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g2018 10 32720459 32725943 Acco10g2018 10 32720459 32725943 ECH