Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2015 ATGAATATTCAAAATTTGTTCAAGCCCTGCTCTCTTTGTTGCAATTCCTCTCCCATGGCTTTGCCGAATCAGCAAACCGTTGAATATCCCAGCTTCAAGCTCGTAATCGTTGGTGATGGTGGAACTGGCAAGACGACATTCGTGAAGAGGCATCTGACTGGAGAATTTGAGAAGAAATATGAACCCACCATTGGGGTTGAAGTTCATCCCTTGGATTTTTTCACAAACTGTGGGAAGCTTCGATTCTACTGCTGGGATACAGCTGGACAAGAGAAATTCGGTGGCCTTAGAGATGGATATTATATCCATGGGCAGTGTGCAATTATTATGTTTGATGTTACTGCGCGGCTGACGTACAAAAATGTTCCAACTTGGCATCGTGATCTTTGCCGGGTCTGTGAGAACATCCCGATTGTTCTTTGTGGTAACAAAGTTGATGTAAAGAACAGACAGGTGAAGGCAAAGCAAGTTACTTTCCACAGGAAGAAGAATTTGCAGTACTATGAGATTTCAGCAAAGAGTAACTACAATTTCGAGAAGCCTTTCCTGTACCTTGCCAGGAAACTTGCTGGTGATTCTAACTTGCACTTTGTAGAATCTCCTGCCTTAGCTCCACCAGAAGTTCAGATTGATTTAGCTGCTCAACAACAGCACGAGGCTGAGCTTGCTCAAGCTGCTATCCAACCCCTTCCTGACGACGATGACGATGCATTTGAGTAA 720 0.4403 MNIQNLFKPCSLCCNSSPMALPNQQTVEYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKLRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDSNLHFVESPALAPPEVQIDLAAQQQHEAELAQAAIQPLPDDDDDAFE 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2015 239 SMART rho_sub_3 34 188 IPR001806 GO:0003924|GO:0005525
Acco10g2015 239 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 45 59 IPR002041 GO:0003924|GO:0005525|GO:0006913
Acco10g2015 239 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 112 133 IPR002041 GO:0003924|GO:0005525|GO:0006913
Acco10g2015 239 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 92 110 IPR002041 GO:0003924|GO:0005525|GO:0006913
Acco10g2015 239 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 186 208 IPR002041 GO:0003924|GO:0005525|GO:0006913
Acco10g2015 239 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 148 166 IPR002041 GO:0003924|GO:0005525|GO:0006913
Acco10g2015 239 SMART ran_sub_2 37 238 - -
Acco10g2015 239 ProSiteProfiles small GTPase Ras family profile. 23 228 IPR001806 GO:0003924|GO:0005525
Acco10g2015 239 ProSiteProfiles small GTPase Ran family profile. 25 189 IPR002041 GO:0003924|GO:0005525|GO:0006913
Acco10g2015 239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 210 IPR027417 -
Acco10g2015 239 PANTHER RAN GTPASE 19 237 IPR002041 GO:0003924|GO:0005525|GO:0006913
Acco10g2015 239 FunFam GTP-binding nuclear protein 23 237 - -
Acco10g2015 239 Pfam Ras family 33 189 IPR001806 GO:0003924|GO:0005525
Acco10g2015 239 ProSiteProfiles small GTPase Rab1 family profile. 26 228 - -
Acco10g2015 239 SMART rab_sub_5 32 192 - -
Acco10g2015 239 SMART ras_sub_4 29 192 - -
Acco10g2015 239 CDD Ran 32 197 IPR002041 GO:0003924|GO:0005525|GO:0006913
Acco10g2015 239 NCBIfam small GTP-binding protein domain 32 182 IPR005225 GO:0005525
Acco10g2015 239 Gene3D - 20 237 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2015 Acco-ChrAcco10 32694743 32697492 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g2015 10 32694743 32697492 Acco10g2015 10 32694743 32697492 ECH