Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1887 ATGGCTGCCGCCAAGCCTTGGCGGGCACCTCCAAGCCCCTCCCTTGTAACCTCCATAACTTCACTCCTTCAAACCCTAAATCCCCAGAACTCTAACATCAGTTCCCAACCCCTTAATCAATTCGCTTCTCATCTCAATCCAGACTTGGTCATCCAAGTAATCAAGAACCAGAACAACCCCTTCCACGCTCTCTTCTTCTTCAATTGGGCTTCCAACCCTCAACCTAACCCTAACAACTACTTCCATACTCGCTCTTGTTACGTCGCCATCACTGACATTTTACTTTCTCACTCCCTTTTCAGCACGGCTCTCTCCCTCCTTCACCACTCTCACGGAGTCTCTGACTTCATCATCGCCAGATTCATCAAAGCTTTCGGTGATCGGGGCGATATTAGGGGTGCCATTCATTGGTTCCACTACGTTAAATCATTTGAAAGAGGCCGTTGTTTGCGCTCCTATAATTCGATTTTAGGTGTGCTGGTGAGAGCAAATCGAGTCGATTTGGCCAAGGCTTTCTACGATCAGCTTGTGAAGGAAGGTGTGGTGATTCCCGATGTTTATTCTTACACCACGATGATTAGGGGCTTCTGTAAAATGGGTATGGTGGAGCATGCGAGGAAGGTGTTCGATGAAATGAAGTGTGACCCCAACTTGGTCACTTGCAACACCATGATCAATGCTTTTTGTAAGAAAGGTGAAACAGAGAGTGCCAAGATGATTCTTTATCAAATGATTGACAGTAAGAAATGTGTACCGGATGTGGTAACTTACACGACTTTGATTGATGGTTACTCTAAGAGAGGTGAATTGCACGAGGCCATGAACTGTATGATGGATATGACAAAGCATGGTATTGAGCCTAATGTCTTGACCTACAATGCACTTATAGAAGGTCTCTGTTTGAGCGGGAAGGTAGACGAAGGAAAGAGGATGATGACCAGGATGCGGTTAAATGGTTTAAAAGACGATATTGTCACACATACGAGCCTAATGAAGGGGTTTTGCATAGCAGGCAAGTCTGATGAAGCAATCAAGCACATGAAGGAAATGGTTAGCCTTGGGATGAATCCAGATGTGAAGTCTTACGGCATTGTTATTAACGAGTGTTGCAAAATTAGAAAACCAGCTGAAGCAATTTCACTTCTAAGGGATATGAGGGCGAGGAGCATCAAACCAAGCGCGTCCAATTTCAATGCGGTGTTTAGAGTTCTTGTGGACATAGGGAAGCTTCAAGAAGCCATTCTTCTTTTAAAGCAGATGCCAGAATTTGGCTGCTTGCCTAATTTCTTATCATATAGCGTAGTGATATATGGTCTTTGTAAAGTGAAGAGTAGGATGCAAGAAGTTGAAGAGCTGGTTAGGGACATGCTTCGGAATGGACATGAGCCAGATGCTACCATGTACAACTGCTTGCTTCAAGGGTACTGTGAGGACAGCAATGAGCAAATGGCAATTCAGACCGCTTATGACATGATTGGCAATAACTTTGTGGTTAGTTTAGATAGCTTCTCTAATTTGGTCAAGGTTTTGCGCGGGAAGCAATATAACAAAGGGGTTGAAATGATATATGAAGAGATGCTTAGGAGATGCCCTGTACCTGAACCCGACGTGGATGCATACAAAAGGGTCTTACTTTTAACTGAGCATTCATGCTCAAATTCGGCAGAGTAA 1671 0.4417 MAAAKPWRAPPSPSLVTSITSLLQTLNPQNSNISSQPLNQFASHLNPDLVIQVIKNQNNPFHALFFFNWASNPQPNPNNYFHTRSCYVAITDILLSHSLFSTALSLLHHSHGVSDFIIARFIKAFGDRGDIRGAIHWFHYVKSFERGRCLRSYNSILGVLVRANRVDLAKAFYDQLVKEGVVIPDVYSYTTMIRGFCKMGMVEHARKVFDEMKCDPNLVTCNTMINAFCKKGETESAKMILYQMIDSKKCVPDVVTYTTLIDGYSKRGELHEAMNCMMDMTKHGIEPNVLTYNALIEGLCLSGKVDEGKRMMTRMRLNGLKDDIVTHTSLMKGFCIAGKSDEAIKHMKEMVSLGMNPDVKSYGIVINECCKIRKPAEAISLLRDMRARSIKPSASNFNAVFRVLVDIGKLQEAILLLKQMPEFGCLPNFLSYSVVIYGLCKVKSRMQEVEELVRDMLRNGHEPDATMYNCLLQGYCEDSNEQMAIQTAYDMIGNNFVVSLDSFSNLVKVLRGKQYNKGVEMIYEEMLRRCPVPEPDVDAYKRVLLLTEHSCSNSAE 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1887 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Acco10g1887 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 215 IPR002885 -
Acco10g1887 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 463 IPR002885 -
Acco10g1887 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Acco10g1887 556 Pfam Pentatricopeptide repeat domain 452 510 IPR002885 -
Acco10g1887 556 Pfam PPR repeat family 397 441 IPR002885 -
Acco10g1887 556 Pfam PPR repeat family 323 371 IPR002885 -
Acco10g1887 556 Pfam PPR repeat family 252 300 IPR002885 -
Acco10g1887 556 Gene3D Tetratricopeptide repeat domain 213 316 IPR011990 GO:0005515
Acco10g1887 556 Gene3D Tetratricopeptide repeat domain 317 420 IPR011990 GO:0005515
Acco10g1887 556 NCBIfam pentatricopeptide repeat 255 289 IPR002885 -
Acco10g1887 556 NCBIfam pentatricopeptide repeat 397 428 IPR002885 -
Acco10g1887 556 NCBIfam pentatricopeptide repeat 361 393 IPR002885 -
Acco10g1887 556 NCBIfam pentatricopeptide repeat 152 185 IPR002885 -
Acco10g1887 556 NCBIfam pentatricopeptide repeat 325 359 IPR002885 -
Acco10g1887 556 NCBIfam pentatricopeptide repeat 431 465 IPR002885 -
Acco10g1887 556 NCBIfam pentatricopeptide repeat 187 214 IPR002885 -
Acco10g1887 556 NCBIfam pentatricopeptide repeat 291 320 IPR002885 -
Acco10g1887 556 NCBIfam pentatricopeptide repeat 219 254 IPR002885 -
Acco10g1887 556 Pfam PPR repeat 152 181 IPR002885 -
Acco10g1887 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 252 IPR002885 -
Acco10g1887 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Acco10g1887 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Acco10g1887 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Acco10g1887 556 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 46 377 - -
Acco10g1887 556 Gene3D Tetratricopeptide repeat domain 18 212 IPR011990 GO:0005515
Acco10g1887 556 Gene3D Tetratricopeptide repeat domain 421 493 IPR011990 GO:0005515
Acco10g1887 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Acco10g1887 556 Pfam PPR repeat 184 213 IPR002885 -
Acco10g1887 556 Pfam PPR repeat 214 244 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g1887 153 537 Glycosyltransferase AT1G05670 30.077 8.69e-59 206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g1887 10 31749668 31751338 Acco10g1887 10 31749668 31751338 ECH