Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco10g1330 | ATGGCCTTCATCAATTCCAGATTACGATTCTGCCATTCTCTCACCCGCACTTCCAAATTCTATTCTTCTTCTTCTTCAGCTTTAGTTTCAGAAGCTACCCTTCAAGAAGACGTGGATGAAACACACCAAAGCACTTCCTTATCCCCTGAAGAAACCCTCATAGCCGAAAATTTTCATGCTCTAATCAAAGACCATTACCGCAACAACCCTAACCCAAACGCCGCCCCACCCACTCCTCATTTCACAATACCCGATCTCTCCCTTGACTTCTCTCGAATCGCCTCCCACCAATCTCTTTCCCCCTCCGTCGTCCGCCGCGTGCTTGAGAAATGCGGCGGCGTCCGCCATGGTATCCCTTTCCTCCAATCCCTTGCTTTCTTCAATTGGGCTACCACGTGCGAGGGTTTTCCCATCACACCGGAGCCCTATGTCGAGATGGTTGACCTCGCCGGGAAGCTCAGGCACTTCGATTTGGCATGGCATCTCATCGATTTGATGAAAGCCAGAGGTGTACAAATAACCGTCGAGACATTCTCTTTCCTCGTCCGGCGATACGTGAGAGCAGGATTGGCTGCGGAGGCCGTCCACACTTTTAACCGTATGGAAGATTATGGCTGTACGCCTGACAAGATTGCTTTCTCAATTGTCATTAGTATTTTGTGCAAGAAGAGAAAGGCAAGCGAAGCTCAGTCTTTCTTCGATAGCTTGAAGCACCGATTTGAGCCCGATGTCATAGTGTACACCAACCTGGTTCGTGGTTGGTGCCGAGCAGGCAATATTTCAGAGGCCGAGCGTGTGTTTGCGGAGATGAAGGATGCAGGAATCAAACCAAATGTTTATACTTACAGCATTGTGATTGACTCCCTATGCCGGTGTGGACAAATCACTCGTGCGCATGATGTTTTCTCTGAGATGATAGATGTGGGTTGTGATCCAAATTCTATTACTTTCAACAATCTCATGCGTGTTCACGTCAAAGCTGGAAGAACTGAGAAGGTATTGCAAGTTTACAATCAGATGAAGAGACTTGGATGTCCTCCTGATACTATCACCTATAATTTCCTCATTGAGACGCATTGTAAAGATGATAATCTTGAGGAAGCTATCAAGGTTCTCAACTCAATGGTCAAGAAAGGGTGTGCTCCTAATGCTCCTACTTTCAATCTTATATTCAGATGCGTAGCTAAGTTACATGATATAAATGGTGCTCATAGGCTGTATGCTAAAATGAAGGAACTCAAGTGTGAGCCTAATACCCTGACCTACAATATATTAATGGGCATGTTCACTCATGCGAGATCTACTGATATGGTGCTCAAGATGAAGAAGGAAATGGATGAGAATGAAGTGGAGCCTAATGTAAATACTTACAGGTTGTTGATCACAATGTATTGTGGAATGGGGCACTGGAATAATGCGTACAAGTTGCTGAGAGAGATGGTTGAAGAGAAGTGCATAAAACCGAGTCAGGTGGTTTATGAGATGGTTCTGAGCGAGCTGAGGAAGGCAGGACAGTTAAAGAAGCATGAGGAGTTGGTGGATAAAATGGTTGACAGGGGATTTGTCTCTCGCTCCATATAG | 1581 | 0.456 | MAFINSRLRFCHSLTRTSKFYSSSSSALVSEATLQEDVDETHQSTSLSPEETLIAENFHALIKDHYRNNPNPNAAPPTPHFTIPDLSLDFSRIASHQSLSPSVVRRVLEKCGGVRHGIPFLQSLAFFNWATTCEGFPITPEPYVEMVDLAGKLRHFDLAWHLIDLMKARGVQITVETFSFLVRRYVRAGLAAEAVHTFNRMEDYGCTPDKIAFSIVISILCKKRKASEAQSFFDSLKHRFEPDVIVYTNLVRGWCRAGNISEAERVFAEMKDAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDVGCDPNSITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDTITYNFLIETHCKDDNLEEAIKVLNSMVKKGCAPNAPTFNLIFRCVAKLHDINGAHRLYAKMKELKCEPNTLTYNILMGMFTHARSTDMVLKMKKEMDENEVEPNVNTYRLLITMYCGMGHWNNAYKLLREMVEEKCIKPSQVVYEMVLSELRKAGQLKKHEELVDKMVDRGFVSRSI | 526 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco10g1330 | 526 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 383 | 417 | IPR002885 | - | |
| Acco10g1330 | 526 | Gene3D | Tetratricopeptide repeat domain | 333 | 443 | IPR011990 | GO:0005515 | |
| Acco10g1330 | 526 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 243 | 277 | IPR002885 | - | |
| Acco10g1330 | 526 | Pfam | PPR repeat family | 242 | 291 | IPR002885 | - | |
| Acco10g1330 | 526 | Pfam | PPR repeat family | 417 | 465 | IPR002885 | - | |
| Acco10g1330 | 526 | Pfam | PPR repeat family | 347 | 396 | IPR002885 | - | |
| Acco10g1330 | 526 | SUPERFAMILY | TPR-like | 209 | 480 | IPR011990 | GO:0005515 | |
| Acco10g1330 | 526 | Pfam | PPR repeat | 315 | 345 | IPR002885 | - | |
| Acco10g1330 | 526 | Pfam | Pentatricopeptide repeat domain | 162 | 220 | IPR002885 | - | |
| Acco10g1330 | 526 | Gene3D | Tetratricopeptide repeat domain | 444 | 519 | IPR011990 | GO:0005515 | |
| Acco10g1330 | 526 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 348 | 382 | IPR002885 | - | |
| Acco10g1330 | 526 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 453 | 487 | IPR002885 | - | |
| Acco10g1330 | 526 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 418 | 452 | IPR002885 | - | |
| Acco10g1330 | 526 | NCBIfam | pentatricopeptide repeat | 245 | 279 | IPR002885 | - | |
| Acco10g1330 | 526 | NCBIfam | pentatricopeptide repeat | 421 | 454 | IPR002885 | - | |
| Acco10g1330 | 526 | NCBIfam | pentatricopeptide repeat | 177 | 209 | IPR002885 | - | |
| Acco10g1330 | 526 | NCBIfam | pentatricopeptide repeat | 315 | 349 | IPR002885 | - | |
| Acco10g1330 | 526 | NCBIfam | pentatricopeptide repeat | 386 | 419 | IPR002885 | - | |
| Acco10g1330 | 526 | NCBIfam | pentatricopeptide repeat | 280 | 313 | IPR002885 | - | |
| Acco10g1330 | 526 | NCBIfam | pentatricopeptide repeat | 456 | 486 | IPR002885 | - | |
| Acco10g1330 | 526 | NCBIfam | pentatricopeptide repeat | 350 | 384 | IPR002885 | - | |
| Acco10g1330 | 526 | Gene3D | Tetratricopeptide repeat domain | 235 | 332 | IPR011990 | GO:0005515 | |
| Acco10g1330 | 526 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 278 | 312 | IPR002885 | - | |
| Acco10g1330 | 526 | PANTHER | OS03G0856100 PROTEIN | 142 | 383 | - | - | |
| Acco10g1330 | 526 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 489 | 523 | IPR002885 | - | |
| Acco10g1330 | 526 | Gene3D | Tetratricopeptide repeat domain | 94 | 230 | IPR011990 | GO:0005515 | |
| Acco10g1330 | 526 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 174 | 208 | IPR002885 | - | |
| Acco10g1330 | 526 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 313 | 347 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco10g1330 | 177 | 526 | Glycosyltransferase | AT1G05670 | 24.148 | 2.49e-29 | 120 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Acco10g1330 | 10 | 27163397 | 27164977 | Acco10g1330 | 10 | 27163397 | 27164977 | ECH |