Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g1328 ATGCTCCAGCTTCACTCTTGTACGTGTCGCGGTGCTTTCACAGCAAAATCATTTCGTACTTCACCTGCTCTCTTCTCCGCCGGGGGTCGGAATCGTAAGTCTCCTCTCGGTGTTGGGAGAACAATTAGAGCTTGTTGTGGTTTCAACGGAGACTTATACTCCGATGGTGAGCAAGAGCCGGTTTTGGTTAATAGGACGAATTTCGCCGGCGTGCGGGTGGAGGAGACCGTTGATGCCGGTTCAGGAAAGCTCAGGCTCGATTCTTGGATCTCTTCCCGCATCAACGGTATAAGTAGGGCTCGAGTGCAATCAAGTATTAGAGCGGGGCTTGTTCATGTCAACGGCCGTGCTGTTCACAAGGTTTCTTTCAATGTCAAGACTGGGGATAAGATCAACTGCACGATTTCAGAGTTACAGCAGTTGAGAGCCGAGCCAGAACATATGGAGTTGGATATTGTTTATGAAGATGAGCATTTGCTAGTAATTAATAAACCTGCTCACATGGTTGTGCATCCAGCACCTGGAAATGCTTCCGGTACTCTTGTCAATGGCATTCTTCACCATTGCAACCTTCCAAATGTTGAGATTCCAAACAAGGAAGCTCTTCCTGAGACTGAAGATTCTGATTCTGATGGCGATTTTGATAGTTTCTCTATTTGTTCAAGTTCCAGTGAAGGTTTACTACCACCCAGCATGTGTGGAGCATCAGTCCGCCCAGGGATTGTGCATAGACTGGACAAAGGCACTAGCGGATTGCTTGTTGTGGCAAAGGATGAACATTCCCATAAACATTTGTCAGAGCAATTCAAGCTACGTACTATCAAGAGGGTGTATGTCAGTATCACTATTGGCGTTCCCTCTCCAACTGCTGGACGTGTCGAGGTTCCAGTTGGTCGTGATCCTAATAATCGGATTCGAATGACTGCTGTAGCTGGATCAATTAATTCTAGAAAAGCCCGTTATGCTGCTAGTAGGTACAAAGTAAGTGAGATACTTGCTAAGGGTGCTTGTGCATTGCTTGAATGGAAGTTAGAAACCGGGCGTACTCATCAGATACGTGCACACTCTAAGTACCTAGGCGTTCCTCTGCTGGGTGATGAGGTGTACGGTGGGACGAAGAGCATGGCCTTATCACTACTTCAGCCCCGAACATCGACGAGCTTGCGTGGCAAAATTGTACAAATGGTTTCTCAGCTAGATAGGCCTTGCCTTCATGCCTTGACTCTTGGGTTTCGGCATCCCCATACAGGAGAGCAGTTGCATTTTACATGTCAGCCCCCTGCAGACTTTGATGAGATTTTGAGCCAGCTTCGGACAATTGGCTGTGAGAGGCTACCTTCCTTTTCATGA 1350 0.4741 MLQLHSCTCRGAFTAKSFRTSPALFSAGGRNRKSPLGVGRTIRACCGFNGDLYSDGEQEPVLVNRTNFAGVRVEETVDAGSGKLRLDSWISSRINGISRARVQSSIRAGLVHVNGRAVHKVSFNVKTGDKINCTISELQQLRAEPEHMELDIVYEDEHLLVINKPAHMVVHPAPGNASGTLVNGILHHCNLPNVEIPNKEALPETEDSDSDGDFDSFSICSSSSEGLLPPSMCGASVRPGIVHRLDKGTSGLLVVAKDEHSHKHLSEQFKLRTIKRVYVSITIGVPSPTAGRVEVPVGRDPNNRIRMTAVAGSINSRKARYAASRYKVSEILAKGACALLEWKLETGRTHQIRAHSKYLGVPLLGDEVYGGTKSMALSLLQPRTSTSLRGKIVQMVSQLDRPCLHALTLGFRHPHTGEQLHFTCQPPADFDEILSQLRTIGCERLPSFS 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g1328 449 ProSiteProfiles S4 RNA-binding domain profile. 84 157 - -
Acco10g1328 449 SMART s4_6 84 142 IPR002942 GO:0003723
Acco10g1328 449 Gene3D Pseudouridine synthase 151 200 - -
Acco10g1328 449 Gene3D Pseudouridine synthase 217 441 - -
Acco10g1328 449 CDD PseudoU_synth_RluA_like 159 411 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Acco10g1328 449 CDD S4 85 163 - -
Acco10g1328 449 SUPERFAMILY Alpha-L RNA-binding motif 83 171 - -
Acco10g1328 449 Pfam S4 domain 85 131 IPR002942 GO:0003723
Acco10g1328 449 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 88 437 - -
Acco10g1328 449 ProSitePatterns Rlu family of pseudouridine synthase signature. 242 256 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Acco10g1328 449 FunFam RNA pseudouridine synthase 2 chloroplastic 71 139 - -
Acco10g1328 449 Pfam RNA pseudouridylate synthase 158 356 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Acco10g1328 449 Gene3D - 70 140 IPR036986 GO:0003723
Acco10g1328 449 SUPERFAMILY Pseudouridine synthase 144 438 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g1328 10 27155436 27158564 Acco10g1328 10 27155436 27158564 ECH