Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1989 ATGGATGGGTATGAAGCTACAAGAATTGTTTTCTCACGGATCCAAAACTTGGACCCTGAGAATGCTTCCAAAATCATGGGTCTACTTCTGATTCAAGACCATGGTGAGAAAGAAATGATTAGATTAGCATTTGGTCCTGAAGCTCTGGTTCACTCTGTGATTGTTAAAGCTCGCAAAGATTTGGGGTTATCCTCGTACTCTCCGTCGTCACCTTCAACTCCTCCATCTTCTTCTTCATCACCACCATCTTTCCTTTCAAGGCAAAATTCTACTCCTTCAAGGCTAAGCAACACTGGAGTCAACTTTCCTCCTCCTGCTCTTGCAATCCCAAACCTCTCTTCTTCAGTGCCTTGGGCTGATAATTTGATGAGTCCAAACAATAATTTACTTGTTGGCTCTAATTCTCCTCATATAAACCTTCCTTCGCCATCTTCTTCCTTATCCTTTTATGGGTCTGATCCAATTGATGAGTTTCAGCTTCAGGACCAGCTTTCTTTCCTTAACGATGGGTCTCCTACTCTTGCCAGGAAAAACCCAGATTTGTTCTATCCTCAGTCTGACTTGTCTTCGAGTCCCACCGGCGGCGGCGCTACCGTCTTTCCGTCTTACGGGTGGGGCGGAGCGGTCCATCGCCGGAGTTGCTCTGTTAACGAAGCTTCTTTGGGGTCTGAGGATCCCAACTCTGGATTTGGTTGGAAGCCTTGTCTTTACTTTGCTCGAGGGTACTGCAAAAACGGTACTAGCTGTAGGTTCCTTCATGGAGGAGGAATTGGAGATTCTGATGGTGTTTCAATGGTTGGGTCTCCTAGTAAGATTGAGATGTTGGAGCAGAGCAATAACCATGAGCTTCTCAGATCTAAAACTGCTCAACAGCAAAGATTGCTCATGGCTTCTTCTTTGCCTTACTCTCCAAAGGGAATGAACTTTCTACTTCAACAGCAGCAAAATAATACCCAGAGAGCTGCAACTGTACTTATGATGAACGAAGATATGCACAAGTTTGGACGATCAAGGCTTGAAAGAAACGGATTTTCATTAAATGGATGTTCTGGAATAGGAAACCCAGCTTCAAGGCAGATCTACTTGACCTTTCCAGCTGATAGTACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGTCCTGTTCAAGATGTGAGGATTCCATATCAGCAGAAACGTATGTTTGGATTTGTGACCTTTGTTTATCCAGAGACTGTGAAGCTTATTCTTTCAAAGGGAAATCCCCATTTTGTTTGTGATTCTCGTGTGCTAGTCAAGCCTTACAAGGAAAAAGGCAAAGTCCCAGACAAGAAACAAGTTGAAAGGGGTGATTTCTCACCTTGTGGTACTCCTGCTGGACTAGATGCTAGAGATCCATTTGATCTTCAACTTGGAGGGAGAATGTATTATAATACTCAAGATATGCTGTGGAGGAGGAAGTTGGAGGACCAAACTGGTTTTCAACAAGCTCTTGAGCTCCAAAGTAGGAAACTCATGGGTCTACAACTTCTTGACATCAAGAAGCAGCACCAGAGGGCATTTTCAACAGGAAGCCCAATTCCTTCCCCTACTCAATCTCCCAACATGTTCAATCAGAATGTTGTTCTTCCTTCATTCTGTCGTGGTGGCAGCCCTGAGGCTTCTCTAGAGGAGAGCGCCTTGAGCTCTGTTCCTCCTAGCACGGCATCGATTTCTGTTGCTCAGCAGCCACCAATGCAACCAAAGGCAGAGCTCTAG 1746 0.4456 MDGYEATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVIVKARKDLGLSSYSPSSPSTPPSSSSSPPSFLSRQNSTPSRLSNTGVNFPPPALAIPNLSSSVPWADNLMSPNNNLLVGSNSPHINLPSPSSSLSFYGSDPIDEFQLQDQLSFLNDGSPTLARKNPDLFYPQSDLSSSPTGGGATVFPSYGWGGAVHRRSCSVNEASLGSEDPNSGFGWKPCLYFARGYCKNGTSCRFLHGGGIGDSDGVSMVGSPSKIEMLEQSNNHELLRSKTAQQQRLLMASSLPYSPKGMNFLLQQQQNNTQRAATVLMMNEDMHKFGRSRLERNGFSLNGCSGIGNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDSRVLVKPYKEKGKVPDKKQVERGDFSPCGTPAGLDARDPFDLQLGGRMYYNTQDMLWRRKLEDQTGFQQALELQSRKLMGLQLLDIKKQHQRAFSTGSPIPSPTQSPNMFNQNVVLPSFCRGGSPEASLEESALSSVPPSTASISVAQQPPMQPKAEL 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1989 581 SUPERFAMILY CCCH zinc finger 232 254 IPR036855 GO:0046872
Acco08g1989 581 Gene3D - 357 452 IPR012677 -
Acco08g1989 581 ProSiteProfiles Zinc finger C3H1-type profile. 229 256 IPR000571 GO:0046872
Acco08g1989 581 MobiDBLite consensus disorder prediction 552 573 - -
Acco08g1989 581 Gene3D - 223 296 - -
Acco08g1989 581 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 365 436 - -
Acco08g1989 581 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 358 434 IPR000504 GO:0003723
Acco08g1989 581 SUPERFAMILY RNA-binding domain, RBD 369 447 IPR035979 GO:0003676
Acco08g1989 581 MobiDBLite consensus disorder prediction 64 99 - -
Acco08g1989 581 CDD RRM_AtC3H46_like 360 429 IPR034365 -
Acco08g1989 581 SMART rrm1_1 359 429 IPR000504 GO:0003723
Acco08g1989 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 370 417 IPR000504 GO:0003723
Acco08g1989 581 MobiDBLite consensus disorder prediction 544 581 - -
Acco08g1989 581 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 234 254 IPR000571 GO:0046872
Acco08g1989 581 SMART c3hfinal6 231 255 IPR000571 GO:0046872
Acco08g1989 581 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1989 Acco-ChrAcco08 34046704 34048983 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco08g1989 08 34046704 34048983 Acco08g1989 08 34046704 34048983 ECH