Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g1122 ATGGTGAGTCAGACATTGCTCCGATCCTTACGCTCAGCTGTGGCTCGTGGCTCCTCTCGTCTCGCACGCCGTGGGTGTTCCACCGATGCAGTACCTGAACGGAAGGTTGCCATACTCGGAGCGGCCGGCGGGATTGGTCAGCCCCTATCAATGTTGATGAAGCTCAACCCCCACGTCTCAAGTCTCTCACTCTACGATATCGCCGGAACCCCCGGTGTCGCCGCTGATATCAGCCACGTTAGCACCAAATCTGAGGTGGCTGGATACGAAGGTGAAGAAGAGCTTGGGAAGGCTTTGGAAGGATCAGATATTGTTCTTATTCCCGCAGGTGTGCCCAGAAAGCCTGGAATGACACGCGATGATCTTTTTAACATTAATGCAGGCATCGTCAAATCACTCTGCATGGCTATTGCCAAGTACTGTCCTAATGCACTTGTTAACGTGATAAGTAATCCTGTGAACTCTACTGTTCCAATTGCTGCTGAGGTTTTCAAGAAGGCAGGGACTTATGATGAAAGGAAGTTGTTTGGGGTCACTACCCTTGATGTTGTGAGGGCAAAAACTTTCTATGCTGGGAAGGCAAAAGTTCCACCTGCTGAGGTTAATGTGCCTGTCGTAGGAGGCCATGCAGGCATAACTATTCTCCCACTATTTTCTCAAGCATCACCAAAAGCCAATCTTGGAGATGATGATATTAAGGCTCTGACAAAACGAACACAGGATGGAGGAACAGAGGTTGTGGAAGCAAAGGCTGGAAAAGGTTCTGCAACACTGTCAATGGCCTATGCTGGAGCACTTTTCGCTGATGCTTGCCTGAAAGGACTTAATGGGGTTTCAGATGTAGTTGAGTGCTCATTTGTGCAATCCAATGTCACTGAGCTGCCTTTCTTTGCTTCTAAGGTGAGGCTTGGGAAGAATGGTGTGGAGGAAGCTATGGGCTTGGGTCCTCTTTCAGATTATGAACAAGAAGGTCTTGACAGCCTTAAGTCTGAACTCAAAGCATCTATTGAGAAAGGAATCAACTTTGCCAACAAGAGTTAA 1041 0.4813 MVSQTLLRSLRSAVARGSSRLARRGCSTDAVPERKVAILGAAGGIGQPLSMLMKLNPHVSSLSLYDIAGTPGVAADISHVSTKSEVAGYEGEEELGKALEGSDIVLIPAGVPRKPGMTRDDLFNINAGIVKSLCMAIAKYCPNALVNVISNPVNSTVPIAAEVFKKAGTYDERKLFGVTTLDVVRAKTFYAGKAKVPPAEVNVPVVGGHAGITILPLFSQASPKANLGDDDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVSDVVECSFVQSNVTELPFFASKVRLGKNGVEEAMGLGPLSDYEQEGLDSLKSELKASIEKGINFANKS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g1122 346 Pfam lactate/malate dehydrogenase, NAD binding domain 35 177 IPR001236 GO:0016491
Acco08g1122 346 FunFam Malate dehydrogenase 179 345 - -
Acco08g1122 346 CDD MDH_glyoxysomal_mitochondrial 35 343 IPR010097 GO:0006099|GO:0030060
Acco08g1122 346 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 179 342 IPR022383 GO:0016616
Acco08g1122 346 SUPERFAMILY LDH C-terminal domain-like 178 344 IPR015955 GO:0003824|GO:0016616
Acco08g1122 346 Gene3D - 33 178 - -
Acco08g1122 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 177 IPR036291 -
Acco08g1122 346 PANTHER MALATE AND LACTATE DEHYDROGENASE 22 345 - -
Acco08g1122 346 FunFam Malate dehydrogenase 32 178 - -
Acco08g1122 346 Gene3D - 179 345 IPR015955 GO:0003824|GO:0016616
Acco08g1122 346 PIRSF Lac_mal_DH 31 346 IPR001557 GO:0016616|GO:0019752
Acco08g1122 346 ProSitePatterns Malate dehydrogenase active site signature. 178 190 IPR001252 GO:0006108|GO:0016615
Acco08g1122 346 NCBIfam malate dehydrogenase 35 344 IPR010097 GO:0006099|GO:0030060
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g1122 Acco-ChrAcco08 11552063 11557596 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco08g1122 08 11552063 11557596 Acco08g1122 08 11552063 11557596 ECH