Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0366 ATGGCTCCTTTTCCGTCTGAGAACGGCGTTGAAGGAGACGATGAAAGAGAGGAGAACGACGACGAAGAAGAAGAAGAAGAGGATGAGGAGGAGGAGGAGCCGAGACTTAAGTACCAGAGAGTGGGAGGCAGCATACCTTCGCTGCTAGCCAGTGACGCGGCGTCGTGTGTCGCTGTTGCCGAGCGGATGATCGCTATAGGCACTCATTGTGGCACCGTCCATATTCTTGATTTTCTTGGCAATCAGGTGAAAGAATTTGTTGCTCATGCTGCTATTGTCAATGACCTTAGCTTTGACCTAGAGGGTGAATTTATTGGAAGCTGTTCTGATGATGGATCCGTGGTAATAAACAGCCTATTTACTGATGAGAAAATGAAAATTGGGTATCGTCGTCCAATGAAGGCAATTGCTCTGGACCCAAATTATGCGAGAAAAACATCAAGGAGATTTGTTGCTGGTGGCTTAGCTGGCCATTTATATCTTAATTCAAAGGCATGGTTAGGCTATCGTGATCAGGTTTTGCACGCTGGTGAGGGTCCAATACATTCTGTGAAGTGGAGAACAAGTCTTGTTGCTTGGGCCAATGATGCAGGAGTGAAGGTTTATGATGCAGCCAATGATCAGCGTGTAACATTTATTGAAAAACCCCGAGGGAGCCCACACCCTGAGCTTCTGCTCCCTCACTTGGCTTGGCAGGATGATACCTTCTTGGTGATAGCTTGGGGAACATCTATCAAAATTGTATCAATAAGAACAAATCTCTATGAAGCAGTCAATGGGATGAACAGGCCAGGGCCAGTATCTAGTAGGAGCCAGGTGGATGTTGTGGCATCTTTTCAAACCACCTATTTAATCTCAGGAATTGCCCCATTTGGTGATGCTTTGGTTGTTCTTGCTTATATTCCTGGAGAAGATGGAGAACAGGATTTTAGTGGCAATGCTCTTTCTCAGCAGGGCAATGCACAACGACCAGAAGTACACATGGTAACATGGAACAATGATGAACTTTCAACAGACGCTCTACCATTGCATGGTTTTGAGCATTACAAGGCAAATGATTATTCCCTTGCTCATGCTCCCTTCTCAGGTAGCAGTTATGCTGGTGGTCAATGGGCTGCAGGTGATGAACCTCTGTACTACATTATGTCCCCAAAAGATGTAGTCATTGCAAAGCCAAGGGATACTGAAGATCACATTGCATGGCTTCTTCAACATGGCTGGCATGAAAAAGCCTTGGCTGTAGTTGAATCTGGTCAAGGAAGGAGTGAACTTCTTGATGAGGTTGGATCCAGGTACCTCGATCATTTAATTGTGGAAAGAAAATATTCTGAAGCAGCTTCTTTGTGTCCCAAGTTGCTGCGAGGGTCAGCTTCAGCATGGGAAAGATGGGTTTTCCACTTTGCACACCTTCGTCAACTTCCTGTATTGGTCCCCCATATGCCTACTGAAAACCCTAGACTGCGAGATACTGCTTATGAGGTCGCTCTTGTTGCATTGGCTACAAATCCATCCTTTCACAGGGATCTCTTGTCCATTGTCAAATCCTGGCCTTCTGTAATTTATAGTGCATTGCCTGTTATTTCAGCCATTGAACCTCAGCTCAATACTTCATCCATGACTGACGCACTCAAGGAGGCATTGGCTGAGTTGTATGTAATCAACGGGCAATATGAGGAAGCCTTTTCATTGTATGCTGATCTTATGAAACCAGAAATATTTGACTTCATTGATAAACATAATCTACATGAAGCAGTCCAAGAAAAGGTTGCCCAACTGATGATGCTAGATTGCAAGCGTGCAGTTTCTCTATTTATTCAAAACAGGGACTTTATAAGTTCAACTGAAGTTGTGAAGCAACTTCTAAATGGTGATAATAAGCGTGAGTGCAGATATTTTCTGCATTTATACCTTCATTCATTATTTGCAGTAAACCCACATGCTGGGAAGGAATTCCACGATATGCAGGTTGAACTTTACGCAGATTATGACCCAAAGATGCTGCTACCATTTCTTCGCAGTAGTCAACACTATACCCTTGAGAAGGCCCATGAAATTTGCATCAAAAGAGATCTAGTGAGGGAGCAGGTCTTCATCGTAGGAAGAATGGGAAACTCAAAACAAGCCCTATCTATTATTATTGACAAATTAGGGGATATAGAGGAGGCGGTAGAGTTTGTCACCCTGCAGCATGATGATGAACTTTGGGAAGAACTGATCAAGCAATGCCTACACAAACCTGAAATGGTGGGCATCCTATTGGAACACACTGTTGGGAATCTTGATCCCCTCTATATTGTAAACAAGGTTCCCAATTGGATGGAAATACCTCGACTTAGGGATCGGTTAGTTAAAATTATCACCGATTACAGGACTGAAACGTCACTCAGACATGGGTGCAATGATATCCTGAAGGCAGACTGTGTCAACCTTTTTGTTAAGTATTACAAAGAGGCGAGGCATGGAGTTTATCTAAGTAATGAGACCGAACCACGGGCTAAAAGAAGTGAAAATCATTATTCTCAGGTGGTTGAGAAATCTACAGTTTTGAGAAACGTTGAAGTGAAGTCGAAGAACAGGGGAGGTGGAAGATGTTGTATATGTTTTGACCCTTTTTCTATTCAGAATGTATCTGACTCAGTCGTTATTTTCTTTTGCTGTCATGCCTATCACACAACTTGTCTAATGGATTCAACTGACACAAGCAGTAGCAATAAAGAGATTGAAGTCACCTATGGAAAGGCAGAGCATAATGATTATAATAGTTATGTGGATGAAGAAGAATCCGAGACGGATGATCATCGTATGCGTTGTGTATTATGTACTACTGCTGCCAGTTGA 2838 0.4313 MAPFPSENGVEGDDEREENDDEEEEEEDEEEEEPRLKYQRVGGSIPSLLASDAASCVAVAERMIAIGTHCGTVHILDFLGNQVKEFVAHAAIVNDLSFDLEGEFIGSCSDDGSVVINSLFTDEKMKIGYRRPMKAIALDPNYARKTSRRFVAGGLAGHLYLNSKAWLGYRDQVLHAGEGPIHSVKWRTSLVAWANDAGVKVYDAANDQRVTFIEKPRGSPHPELLLPHLAWQDDTFLVIAWGTSIKIVSIRTNLYEAVNGMNRPGPVSSRSQVDVVASFQTTYLISGIAPFGDALVVLAYIPGEDGEQDFSGNALSQQGNAQRPEVHMVTWNNDELSTDALPLHGFEHYKANDYSLAHAPFSGSSYAGGQWAAGDEPLYYIMSPKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYSEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPHMPTENPRLRDTAYEVALVALATNPSFHRDLLSIVKSWPSVIYSALPVISAIEPQLNTSSMTDALKEALAELYVINGQYEEAFSLYADLMKPEIFDFIDKHNLHEAVQEKVAQLMMLDCKRAVSLFIQNRDFISSTEVVKQLLNGDNKRECRYFLHLYLHSLFAVNPHAGKEFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAHEICIKRDLVREQVFIVGRMGNSKQALSIIIDKLGDIEEAVEFVTLQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNWMEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLFVKYYKEARHGVYLSNETEPRAKRSENHYSQVVEKSTVLRNVEVKSKNRGGGRCCICFDPFSIQNVSDSVVIFFCCHAYHTTCLMDSTDTSSSNKEIEVTYGKAEHNDYNSYVDEEESETDDHRMRCVLCTTAAS 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0366 945 Pfam Region in Clathrin and VPS 606 747 IPR000547 GO:0006886|GO:0016192
Acco08g0366 945 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 604 751 IPR000547 GO:0006886|GO:0016192
Acco08g0366 945 MobiDBLite consensus disorder prediction 1 39 - -
Acco08g0366 945 Gene3D - 6 275 IPR015943 GO:0005515
Acco08g0366 945 Coils Coil 12 32 - -
Acco08g0366 945 PANTHER VACUOLAR PROTEIN SORTING VPS41 14 937 IPR045111 GO:0006623
Acco08g0366 945 SMART WD40_4 167 203 IPR001680 GO:0005515
Acco08g0366 945 SMART WD40_4 79 118 IPR001680 GO:0005515
Acco08g0366 945 SUPERFAMILY Putative isomerase YbhE 62 252 - -
Acco08g0366 945 FunFam Vacuolar protein sorting-associated protein 41 homolog 5 277 - -
Acco08g0366 945 FunFam Vacuolar protein sorting-associated protein 41 homolog 545 810 - -
Acco08g0366 945 MobiDBLite consensus disorder prediction 11 32 - -
Acco08g0366 945 SUPERFAMILY RING/U-box 863 903 - -
Acco08g0366 945 SMART ring_2 864 940 IPR001841 -
Acco08g0366 945 PIRSF Vps41 4 907 IPR016902 GO:0034058|GO:0046907
Acco08g0366 945 CDD RING-H2_Vps8 862 897 - -
Acco08g0366 945 SMART CLH_2 604 751 IPR000547 GO:0006886|GO:0016192
Acco08g0366 945 Gene3D Tetratricopeptide repeat domain 537 809 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0366 Acco-ChrAcco08 2863316 2870418 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco08g0366 08 2863316 2870418 Acco08g0366 08 2863316 2870418 ECH