Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0249 ATGAGCCAAGAATCTTTGATCATCGTTAGTGTTCTAAGAAACTGGTGGCTCTGTAAATTGGCTTTATTTGACAGGGGAAAAATGTATTCTTTTGGTAGGAATTGCTTGAAACATAGTAGCTGCTCCATGAGAAACTTTTTGAATTATCTTTGCTTTGCAAACTCATTTGGGCAGAGATTTCATGAATCAGCTGTGCTCAGTACTCCCATTCTGCAAAATTCTAAGAAGATTACTCTTTATGAAACTCATAAAATTGAACCCTTTTTCCAAATTTATTCTAAAACAACTCCAGCCCTGCGTGCACGCTCTTCTGTTGCTTCTCATTATTCAACCAAACCACCTTCAAGGTCTTTTCGAAGAAGAGCCCGTAAGAGACTGTTAAAATCCTTGAAGCCTACTCTAGATGAAGCCCGATTTCAATCAGCCTTGTCCCAACTATCCCCAAGGTTCTCTCCTGAAGAACTCTGTAATGTTATTACTTTTCAAGAAGACCCATTAGTTTGCTTGGAGCTCTTTAATTGGGCATCACAACAACCCAGATTTCGGCACAATGACGCCACTTACCACATAACCATCCAGAAGCTCGGTGCAGCAAAAATGTACCAAGAAATGGATGATATTGTCAACCAGGTGCTTGCAGTTCCCTTAGTTTGTTCAGAGGTACTTTACAATACTATAATATATTATTTCACACAAGCTCGAAAGTTGACTCGAGCTGTCAATATATTTAACCACATGAAAAGTAGCAGAAATTTGAATTGCAAGCCTTCTATCAGAACCTATAATATCCTTTTTGCGGCACTGTTGAGCAGAGGAAGCAACTCTTACATAAATCATGCGTATATGGACACTATCAGATGCCTGTTTAAGCAAATGGTCAATGATGGGATACAGCCTGATATATTTTCTTTAAATTCCATGATTAAAGGTTATGTGCTTTCTCTCCATGTTAATGATGCGCTGAGGATATTCCATCAGATGGGTGCGGTTTATGCTTGCAAGCCTAACTCATTTACCTATGATTATTTGGTACATGGCCTGTGTGCACAAGGAAGGACGAAGAATGCTAAAGAAATATGTGATGAAATGAAGAATGAAGGCTTAATCCCAAGTAGCAAATCTTATAATTCACTTGTCAATGCTTTGGCACTTGGTGGAGAGATTGAGGAAGCAGTAAAATATCTGTGGGAGATGACTGAAAATCAGAGGTCGGCTGATTTTATTACATATAGGACTGTACTGGATGAGATATGTAGACAAGGAAGAGTTCAGGAAGCAATGAGGTTATTGCAGCAGTTTCAAGAGAAGGACCTTGTGGATGGGCATGCTTACCGAAAACTTCTTTGTGTGCTGGAAGATGACTATGGGAATTCTGTTAGTAGAGTTGATCCAGGAGTATTCCACGACAAGACTATTGCTCATGGCAAGATAAGAACGAGATGGTTCTCGCACGCTATTTTGGGCTGCCTTTCACTGGAAAAGTTGCAGTTTTATGCATGGCAAGATGGAATATTGCCTTTATATGAGTTCCTCGGGAGGGAGCAAAATTTAGAAGAACGGTTATGCAAATGTGGTGCAAAACGATTAGTATTCTCTGTCCCACCAAAAAATGAAAGACTCATTGATCCCCAGGTGCAGAATATGCTAAAAGAAGGTTGGCTCAGGACAAATTTGAACATCACATTAAGCCTACAGATAGACCCAGACGCTGACGTTTACCTTCCTACCCTTGTGAATGTAATTTGTGGGACTCAAAACCACCAGGTGGAACCAATCATTTATGACTGA 1788 0.3993 MSQESLIIVSVLRNWWLCKLALFDRGKMYSFGRNCLKHSSCSMRNFLNYLCFANSFGQRFHESAVLSTPILQNSKKITLYETHKIEPFFQIYSKTTPALRARSSVASHYSTKPPSRSFRRRARKRLLKSLKPTLDEARFQSALSQLSPRFSPEELCNVITFQEDPLVCLELFNWASQQPRFRHNDATYHITIQKLGAAKMYQEMDDIVNQVLAVPLVCSEVLYNTIIYYFTQARKLTRAVNIFNHMKSSRNLNCKPSIRTYNILFAALLSRGSNSYINHAYMDTIRCLFKQMVNDGIQPDIFSLNSMIKGYVLSLHVNDALRIFHQMGAVYACKPNSFTYDYLVHGLCAQGRTKNAKEICDEMKNEGLIPSSKSYNSLVNALALGGEIEEAVKYLWEMTENQRSADFITYRTVLDEICRQGRVQEAMRLLQQFQEKDLVDGHAYRKLLCVLEDDYGNSVSRVDPGVFHDKTIAHGKIRTRWFSHAILGCLSLEKLQFYAWQDGILPLYEFLGREQNLEERLCKCGAKRLVFSVPPKNERLIDPQVQNMLKEGWLRTNLNITLSLQIDPDADVYLPTLVNVICGTQNHQVEPIIYD 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0249 595 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 91 271 - -
Acco08g0249 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Acco08g0249 595 NCBIfam pentatricopeptide repeat 338 371 IPR002885 -
Acco08g0249 595 NCBIfam pentatricopeptide repeat 408 438 IPR002885 -
Acco08g0249 595 NCBIfam pentatricopeptide repeat 221 249 IPR002885 -
Acco08g0249 595 Gene3D Tetratricopeptide repeat domain 275 363 IPR011990 GO:0005515
Acco08g0249 595 Gene3D Tetratricopeptide repeat domain 122 274 IPR011990 GO:0005515
Acco08g0249 595 Gene3D Tetratricopeptide repeat domain 364 439 IPR011990 GO:0005515
Acco08g0249 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Acco08g0249 595 Pfam PPR repeat family 299 348 IPR002885 -
Acco08g0249 595 Pfam PPR repeat family 220 268 IPR002885 -
Acco08g0249 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Acco08g0249 595 Pfam PPR repeat 374 401 IPR002885 -
Acco08g0249 595 Pfam PPR repeat 408 437 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0249 Acco-ChrAcco08 1868617 1871956 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0249 184 440 Glycosyltransferase AT1G05670 23.346 1.00e-12 69.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco08g0249 08 1868617 1871956 Acco08g0249 08 1868617 1871956 ECH