Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0229 ATGACAGCGACGCGCAGCGAGAGAAGCAGCAGCCAAAAAGCCATCCAAACAAAGCCGAAACTCTCTCTTTTTAAGACTCCTTGTGGTTTCCTCTGCCCCTCACCCTTTGGTATCTCTCGCTCTCTTTCTGCGTCTTCGTTATCGTGCGCTTCTGAAACAATCTCGTCCTCACAGTTTCATCATCTCGATCTCTCAACTGTTTTTCATGTTTCAGTTTACCATCTTGTTGCTGCTGGAGATCTCTTGTTTGTCTCTGGAATCGAATTCTGTTTACTTATCATATGTGTTTTGTTCTATTTTTCCTTCAGGGCAATCATGAGTGATGAAGGAGAAAGGACTTGCCCTCTTTGTGCAGAAGAGATGGATTTGACTGATCAGCAGTTGAAGCCTTGCAAATGTGGTTATGAGATATGTGTTTGGTGCTGGCATCACATAATGGACATGGCCGAGAAGGATGATACAGAGGGGAGATGCCCTGCGTGTCGAACTCCATATGACAAGGAGAAGATTGTAGGGATGGCTGCAAACTGTGAGAGACTGGTGGCAGAAATCAATACTGAAAAGAAGATGAAGAGTCAGAAAGCAAAGTCTAAGTCTTCTGAAGGCCGGAAGCAACTGAGCAGTGTGCGAGTGATTCAGCGGAATCTTGTCTATATAGTTGGATTGCCGCTTAATCTGGCAGATGAAGAAATTCTTCAGCATCGAGAGTATTTTGGTCAGTATGGGAAAGTCTTAAAAGTGTCGATGTCTCGGACAGCAGCTGGTGTCATTCAACAGTTTCCAAACAATACATGTAGTGTATATATTACTTACTCAAAGGAAGAAGAAGCAATTCGTTGTATTCAAAATGTACATGGATTTGTCTTGGACGGTAGACCTTTAAGGGCTTGTTTTGGAACCACGAAGTATTGTCATGCATGGCTCCGGAACATGCCCTGCAGCAATCCTGATTGTTTATATCTGCATGAGATTGGCTGTCAAGAAGATAGTTTCACAAAAGATGAAATAATTTCAGCGTACACTAGAAGCAGAGTTCAACAAATTACTGGTGCCTCAAATAATATGCAACGGCGGTCAGGGAATTTGTTGCCACCCCCAGTTGATGATTACATAAACCATTCTGATGGAAAACCCATTGTGAAAAATGCCACAAATAATCCCTCTAGCACTGTGAGAGGTTCACCTCCAAATGGAAGTTCTGGAAGATCTATAACTCTAAATCCTGCTACTGCATGGGGAACAAGAGCTACAAATTGTCAGCCCCCTGCTGGAGGTTTATTAAATGGACCACCTAGGCCGAAAGTTGATGCTGTTAGTGGCACACTGGCCTTTTCTTCGGATGTTGCAGGTTCAAGCCAGAACTCTTTATTGCACAGTGATGCAGCCCAGAGGCCACCGTCAAGTGATGGAAGTTATAATAACCTTGGAGTACCAAATGATTCATTAAAACCTGTAAAGCAATTCAATAGCATGGATAATCCAAGTAATGCAGGTGAAAAGACTGCTACATCTGATGGTTCACTTGCCCCTGTGAATTCAAACAACTTGTTCTCTTCTTTACCATTATCTCGAGATGGTGATAGAGTTAGTTGTACCACATCAAGCACAGCAAATTCTACTGACATCACTGGGCAGTCTTGCAGCTCTGGTCCTGAGGAAGCTACTATTGCTACCAATGAGGAGAGTCAGAACCTGTGCTCCAATCTGTCCTCTGTTAACATTGATAGAAATGGCCAAAATGAATGCTATGGCATGGTCAGATCTAATAGTCCCCCTTCTGATTATGTCTTGACAAAGTCTCCTCAACTTCAAGCATCACAACAGCATAAAGATGACAAATTTAGAGATGTGCAATTTTCCAGCGACTCTGGTAAAGTTGTTCCATCTGATTGGGAGCAGTCTGATTGGAAATTAAATTCACAAGCCCAAGTAGTATCAACTACAACTGACTTGGAAGATGATATAGCTTCTTTTGATAATCAAAGGCTCAAAGATCCAGAAGTTGTTTGTCATTCTCCTTACATGCCTAAGTCAACAAATTTTGTTCATGTCCCAATCCATTCTAATCAGAGCCTCATCCAACATGGGGAACAACCCCCTGCTATGCATGTTGATTTTGCATCTGCAGATTCTAAGGTTGGGGATGATTCTCTGTTACATTCATCCACCGTATTATGTAATGGTTATCCTGATAAATTGGTCAGCAGCTGCTCTCCGGGTTTGAATGGCACCACCGATTTTACCTCACTTCGGGATGTAAGAAATGAACAATGCATAGGAAGATTATTCACTGAATCAGTTGGTGCTGGGAGTGACGCTGCATTGGATAAGGGTGAGAGTAGTATAATTTCAAATATATTGTCCATGGACCTTGATGCATGGGATGACTCATTAACATCACCGCAGACTCTGGTTAAGTTGCTTGGTGATAACACTGATAGCCAGTATGTTCCTTTGAAGAAATCCAGTTCTTTGAAAGTGCAGAATAATAGTCAGTCAAGATTCTCTTTTGCAAGACAGGATGAACCAAAAATCCAAGCATTTAATGCAAACCCATCTTATGGTATTGGCGATCAATTTCCAAGGAGGGGCTCTTTCATGCAGGATTTTTCTGAAAGAGACTTGTATAATGATAGGAAGTTGGGTATGGCAAATGGCTTTTCTTCCTCTAAACTTGAGGAATCTGAAAATCTAAGCAGTGGTCCCTTTGTTGCTTCTAATAAGCATTCTGCTGTTTCTAGAGCTCAAATTTCTGTTCCTCCAGGATTTTCAGTTCCAAGTAGGCCTCCACCAGGTTTCTCTTCTTATGAGAGAGTGGAACAGGCTTTCGGTTCAGTGTCCGGGAATTCATTGCTCGACTCATCCTTGTTAAGAAATTCATATCAGACACCCACAGCTGGAAATATTGGTGGTACAGGGGACATTGAATTAGTAGATCCTGCTATTTTGGCTGTTGGCACTGGCAGACTTCAAGGTCCATTAAACAGCCCAGGGTTGGACATCAGATCTAGTTTCTCCCCACAATTAAATTACTTTGAAAATGAAGCCAGACTTCAATTGTTGATGCAAAGATCTCTATCACAACCACACAACAGATTTTCTGAAATAGGGAGTACATTTTCTCAGATTGGTGATTCTTATGGCATTTCTTCAAGGTTAGATCAATCACAAGTCGGCAATTTGACCCCTTTTGCTCAGTTGTCCTTGCAGCAGTCTAGAAATGCTCTTTTGTCTAATGGTCAATGGGATGGGTGGAATGAGGCGCAGAGTGGAAGTAACCTTGGGGTGGCTGAGCTACTAAGAAATGAAAGACTCGGAATTAACAAGTTATATGCAGGATTTGATGATTCAAAATATCGGATGCCAAACTCTGGGGATATTTACAAGCGAACTTATGGGATTGAGGAAACATTGTCAAACTCTGAAGTGTGGTCTTTAGCTGCAGCTGGTCTGGATTAA 3459 0.4206 MTATRSERSSSQKAIQTKPKLSLFKTPCGFLCPSPFGISRSLSASSLSCASETISSSQFHHLDLSTVFHVSVYHLVAAGDLLFVSGIEFCLLIICVLFYFSFRAIMSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRTPYDKEKIVGMAANCERLVAEINTEKKMKSQKAKSKSSEGRKQLSSVRVIQRNLVYIVGLPLNLADEEILQHREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAIRCIQNVHGFVLDGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGCQEDSFTKDEIISAYTRSRVQQITGASNNMQRRSGNLLPPPVDDYINHSDGKPIVKNATNNPSSTVRGSPPNGSSGRSITLNPATAWGTRATNCQPPAGGLLNGPPRPKVDAVSGTLAFSSDVAGSSQNSLLHSDAAQRPPSSDGSYNNLGVPNDSLKPVKQFNSMDNPSNAGEKTATSDGSLAPVNSNNLFSSLPLSRDGDRVSCTTSSTANSTDITGQSCSSGPEEATIATNEESQNLCSNLSSVNIDRNGQNECYGMVRSNSPPSDYVLTKSPQLQASQQHKDDKFRDVQFSSDSGKVVPSDWEQSDWKLNSQAQVVSTTTDLEDDIASFDNQRLKDPEVVCHSPYMPKSTNFVHVPIHSNQSLIQHGEQPPAMHVDFASADSKVGDDSLLHSSTVLCNGYPDKLVSSCSPGLNGTTDFTSLRDVRNEQCIGRLFTESVGAGSDAALDKGESSIISNILSMDLDAWDDSLTSPQTLVKLLGDNTDSQYVPLKKSSSLKVQNNSQSRFSFARQDEPKIQAFNANPSYGIGDQFPRRGSFMQDFSERDLYNDRKLGMANGFSSSKLEESENLSSGPFVASNKHSAVSRAQISVPPGFSVPSRPPPGFSSYERVEQAFGSVSGNSLLDSSLLRNSYQTPTAGNIGGTGDIELVDPAILAVGTGRLQGPLNSPGLDIRSSFSPQLNYFENEARLQLLMQRSLSQPHNRFSEIGSTFSQIGDSYGISSRLDQSQVGNLTPFAQLSLQQSRNALLSNGQWDGWNEAQSGSNLGVAELLRNERLGINKLYAGFDDSKYRMPNSGDIYKRTYGIEETLSNSEVWSLAAAGLD 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0229 1152 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 106 1128 IPR039780 GO:0004842|GO:0030014
Acco08g0229 1152 CDD RRM_CNOT4 210 309 IPR034261 -
Acco08g0229 1152 Gene3D - 216 297 IPR012677 -
Acco08g0229 1152 SMART rrm2_1 216 297 IPR003954 GO:0003676
Acco08g0229 1152 MobiDBLite consensus disorder prediction 373 434 - -
Acco08g0229 1152 SUPERFAMILY RING/U-box 105 171 - -
Acco08g0229 1152 CDD mRING-HC-C4C4_CNOT4 113 163 IPR039515 -
Acco08g0229 1152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 182 IPR013083 -
Acco08g0229 1152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 301 IPR000504 GO:0003723
Acco08g0229 1152 MobiDBLite consensus disorder prediction 454 552 - -
Acco08g0229 1152 SUPERFAMILY RNA-binding domain, RBD 209 295 IPR035979 GO:0003676
Acco08g0229 1152 Pfam RING/Ubox like zinc-binding domain 114 166 - -
Acco08g0229 1152 ProSiteProfiles Zinc finger RING-type profile. 114 162 IPR001841 -
Acco08g0229 1152 MobiDBLite consensus disorder prediction 378 417 - -
Acco08g0229 1152 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 216 297 - -
Acco08g0229 1152 SMART rrm1_1 216 297 IPR000504 GO:0003723
Acco08g0229 1152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 295 IPR000504 GO:0003723
Acco08g0229 1152 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 106 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0229 Acco-ChrAcco08 1675924 1683448 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3826 01 54030771 54036790 Acco08g0229 08 1675924 1683448 CCT