Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0220 ATGCCACGTTTGGTTTGGCAGCACGGAAGTGGTAGTGAAATCCAGCATTTGTGTGTTTGGGTTTGGGATGAGTCAAGACCCTTCTATCGGGAACAATCCACTACAAGCTATTGCAAAGAAGTCACGGGAGGAGATTTGAATCCAAGTGGTGCATTTTACACTGATCATCCCCAAAGCATTTTCCCAGGCGCCTACGCCGAGCCCGCCATTTATCGGGCACTCACAGCACGTTTCGCTCTCTTGACTCGGACTCTGCTGTTTAGGCTTCTCTTACTTCTTCCCTCACAGTTGTTATGCTCTTCAGGTAGAACAGTGAGTCATCAGGATTTTGAAGCTATCATTTCTTGCTTCTGCATTCCTCTCTGTGGTGTTTGGAGAAAGATGTATAGAGCACGAGCCGAAGGCCTAACCTTCACGAAGGAACCATATATTGAGGATGTTGGACCACGCAGAATCAAGAGCATGCAATTCACTGCGTTATCAGACTCAGAGATCAGTAGAATTGCTGAGGTTCAAGTTGCCAAAGGTTCATACTATGACGAGAGAAGAAAGCCAATTGAAAATGGCTTGTTGGATCCCCACATGGGTCCTGCTAACAAGAGTTGCACGTGTGCAACATGCCATGGGAGTTTTGTTGACTGTCCAGGGCACTATGGATACTTAAACCTTGCTCTTCCAGTTTTCAATGTTGGGTATAAAGAAAAAATTTTGCAAATATTGAAGTGCATTTGTAAGGGCTGTGCTTGTATACTTCTCGATGAAAATTCTTGTAAAGAACGCTTGAAGAAGATGAGAAGCCCCAAAATAGAGCCTTTGAGGAAGATTGCAATAGCTAAAAGTCTTATTGATAAATGTAGTGCCATGACAAGTAGCAAAACAGTGAAGTGTCTAAGATGTGGATTTATCAATGGTCCAGTGAAGAAGCTTGTGTCTAATCTAGGCATTATTCATGATACTTCAAAATGTATTGATGGCATTGAGAAAGATTTAAAGTCAGCAGTTTCTACAAGAGAGTCTGCTTCCACCAACTCAACTACTTATGTTCTAAACCCTCATAGAGTTCTTTCCCTCTTCAAAAGGATGCTTGATGAGGACTGTGAATTACTTGATCTTGCAGACAGACCCGAGAAATTCATTATAACGAACATGGCTGTGCCACCCTTAGCTATTCGACCTTCAGTTATAATGGATGGTTCCCAAAGCAATGAAAATGATGCAACAGAGAGGCTGAGGCAAATAATTCAAGCAAATGCTAACCTTCGCCATGAGCTGCAGGAAGCTAGTGGGGCATTCAAATCTCTGGATGGCTGGGAAATACTTCAAGTTGAGGCTGCTCAATTCATAAATAGTGATGTCCGTGGCATTCCGTTTAATATGCAACGCGCCAAGCCATTAGCTGGCTTTGTTCAACGGCTTAAAGGAAAGCAGGGGCGTTTTCGTGGCAACTTATCAGGGAAACGTGTTGAGTTTACTGGCAGGACAGTCATTTCACCGGATCCTAATCTGAAAATTTCTGAGGTCGCAATACCAATCCACATGGCTCGTATATTGACTTTTCCTGAGTGTGTTTCCCCTCACAACATTGAGAAGTTGAGACAGTGTGTGAGAAATGGCCTTGATAAGTATCCTGGTGCAAGGTTGCTTAGACATGCTGGTGGCACATCAAGGTCCTTAAAAGTTTCGTTTCGGAAGCGCCTTGCTGATGAATTGAGGTATGGTGATATTGTTGATCGTCATTTGGAAGACGGAGACATAGTTCTTTTCAATAGACAACCAAGCTTGCATCGGATGTCTATCATGTGTCACAGGGCTAGAGTTATGCCTTGGAGAACTCTGAGATTCAACGAATCGGTCTGCAACCCATATAATGCTGACTTTGATGGTGATGAGATGAATTTACATGTCCCGCAAACTGAGGAGGCACGGACAGAGGCTGTTTTATTGATGGGGGTGCCAAACAATTTATGCACACCAAAGAATGGAGAAATTCTGGTTGCCTCTACTCAAGACTTTTTAACCTCCTCATTTCTGATAACAAGAAAAGATACATTTTATGATCGTTCTGCTTGTGCACTTATTTGCTCGTACATGGGTGATGCCATGGATATTGTCGATCTGCCAACTCCAGCAATTATAAAGCCAGTAGAGCTTTGGAGTGGGAAACAGATATTTAGTGTTCTAATACGCTCTAATGCAAATGTGAGGACCTATGTGAGTCTTACTGTTAAGGAGAAGATCTACAGCACAAAGCTTGATGACAGGAAAAGAGAGTTAAAAACAATCTGTCCTAATGATGGGTTTGTTTATTTTCGCAACAGTGAGTTGATATCTGGGCAACTTGGAAAGGTTACTTTAGGAAATGGAAATAAGGATGGACTTTTCTCAGTGCTACTTAGAGACTATAAAGCCCATGCTGCAGCCTCTTGCATGAACCGTCTAGCTAAGTTGAGTGCTCGATGGATAGGCAATCGTGGGTTCTCCATAGGCATTGATGATGTCCAACCTAAAGAGGGATTGATCAAAAAGAAAGATGAAACAATTTCAGATAACTACAGAAAATGTGATAATTTTATAGAGGCTTTCAATAAAGGAAAGCTAGAACTCAAAGCCGGTTGTGATGCTGCTCAAACATTGGAGGCTTTAATAACTAATGTGTTGAATGGCATTCGAGATACTGCAGGGAAGGTTTGCATGCAAACACTGCACTGGAGAAATAGTCCCTTGATCATGTCACAGTGTGGCTCCAAAGGATCTCCTATAAATATTAGCCAAATGGTTGCGTGTGTTGGTCAACAGTCAGTTGGGGGTCGTCGAGCTCCCAATGGGTTCATGGAACGGAGTCTTCCTCATTTCCCAAGAAAAGCAAAGACCCCTGCAGCAAAAGGTTTTGTGGCCAATTCCTTTTATAGTGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACTGCGGTGAAAACTGCTGACACTGGTTATATGTCTCGTAGATTAATAAAAGCTTTGGAGGACTTGTTTGTCCACTATGATAACACTGTAAGAAACGCTAGTAGTTGTGTAGTTCAATTTTGCTATGGAGATGATGCCATGGATCCAGCTGGCATGGAAGGAAAAAATGGAAAACCTTTGAATTTTGAGCGGTTGTTCTTGAAAAGCAAGGCTATATGTCCCAGTGATGGAGATGATGAAATCCTATCCTCCTCTGATGTGTGTAAAGTTGTGCAAGACAAACTGTCAGAATTTGGTATGTTGAAACAGAAAGGAACTTCAGAAGATGATATAAGTTCTGAGGTGGGTTGCTCTGCCGACTTCATCAATTGCCTACAATCCTTCATCAGAGATAACGTTGGAGTCTTATCAGAAAAAGATGAAACTTCTGTTGGTGATGAAAGTAGAAATCAGAAAAAATTTATTCAGAGGATATCTGGTATTACTAGTAGACAGCTAGAGGTTTTCTTGGATATATGTCTTTCTCGATATCGTTCAAAAAGAATTGAGGCTGGAACTCCAATTGGTGCCATTGGTGCTCAAAGTATTGGAGAGCCTGGGACACAGATGACTTTGAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGAATGTTACTCTTGGAGTTCCACGTATCAAAGAAATAATAAATGGCGCCAAAAGAATCAGTACACCTATCATTACTGCAATACTTGATAGTGATGATAATGCTAATACTGCGAGGATGGTAAAAGGTCGCATTGAGAAAACAAACTTGGGCCAGATAGCAAAGGGCATAAAAATTGTGATGACATCAAGATCAGCATCGATTGTTATCACACTGGACATGGAAATAATCCGAGGTGCACAATTGAATATAGATGCTAATATTGTAAGGGAATCCATTTTGCATGCTCCAAAATTAAAATTGAAGCCAGAGCACATTAACGTTTTGGATGTGGAAAAGCTTGCAATTGTACCCCAAGATGCAGATAGAAGTAAAATCAATTTTCAACTTAACCATCTAAAAAAATTGCTTCCATCAGTTGTAGTAATGGGAATTAAGACTGCTGAACGTGTTGTTATCAGTAAAGAAGAAGATAAAGTGACAAAGATGGAGAAGTTCAAGTTGTTGGTGGAAGGCACGGGCCTTCAAGAGGTTATGGGCATTGAGGGGGTTAACGGACGTAAAACTCTTAGTAATCATATCATTGAAGTAGAGCAGACTCTAGGAATTGAAGCAGCTAGAAAGTGTATCATTGAGGAGATAAAGTTTACAATGGGAAGCCATGGAATGAGTATAGACATACGACATATGATGCTTTTGGCTGATGTGATGACCTTCAGGGGTGAAGTCCTTGGAATAACTAGATTTGGAATCCAAAAGATGGACAAGAGTGTATTAATGCTAGCATCATTCGAGAAGACTGCAGATCACCTTTTCAATGCTTCTGTGCATGGGAGGGATGACCAGATTGAAGGAGTGACTGAATGCATAATCATGGGCACACCAATTCAGATAGGCACTGGAATGATCAAGGTTAAACAAAGATTGGATCCTCCAGCGCTGTGTCAGGGTGCCGATCCTATTCTGGCTTGA 4587 0.4164 MPRLVWQHGSGSEIQHLCVWVWDESRPFYREQSTTSYCKEVTGGDLNPSGAFYTDHPQSIFPGAYAEPAIYRALTARFALLTRTLLFRLLLLLPSQLLCSSGRTVSHQDFEAIISCFCIPLCGVWRKMYRARAEGLTFTKEPYIEDVGPRRIKSMQFTALSDSEISRIAEVQVAKGSYYDERRKPIENGLLDPHMGPANKSCTCATCHGSFVDCPGHYGYLNLALPVFNVGYKEKILQILKCICKGCACILLDENSCKERLKKMRSPKIEPLRKIAIAKSLIDKCSAMTSSKTVKCLRCGFINGPVKKLVSNLGIIHDTSKCIDGIEKDLKSAVSTRESASTNSTTYVLNPHRVLSLFKRMLDEDCELLDLADRPEKFIITNMAVPPLAIRPSVIMDGSQSNENDATERLRQIIQANANLRHELQEASGAFKSLDGWEILQVEAAQFINSDVRGIPFNMQRAKPLAGFVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKISEVAIPIHMARILTFPECVSPHNIEKLRQCVRNGLDKYPGARLLRHAGGTSRSLKVSFRKRLADELRYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAVLLMGVPNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSACALICSYMGDAMDIVDLPTPAIIKPVELWSGKQIFSVLIRSNANVRTYVSLTVKEKIYSTKLDDRKRELKTICPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKAHAAASCMNRLAKLSARWIGNRGFSIGIDDVQPKEGLIKKKDETISDNYRKCDNFIEAFNKGKLELKAGCDAAQTLEALITNVLNGIRDTAGKVCMQTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFMERSLPHFPRKAKTPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLFVHYDNTVRNASSCVVQFCYGDDAMDPAGMEGKNGKPLNFERLFLKSKAICPSDGDDEILSSSDVCKVVQDKLSEFGMLKQKGTSEDDISSEVGCSADFINCLQSFIRDNVGVLSEKDETSVGDESRNQKKFIQRISGITSRQLEVFLDICLSRYRSKRIEAGTPIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITAILDSDDNANTARMVKGRIEKTNLGQIAKGIKIVMTSRSASIVITLDMEIIRGAQLNIDANIVRESILHAPKLKLKPEHINVLDVEKLAIVPQDADRSKINFQLNHLKKLLPSVVVMGIKTAERVVISKEEDKVTKMEKFKLLVEGTGLQEVMGIEGVNGRKTLSNHIIEVEQTLGIEAARKCIIEEIKFTMGSHGMSIDIRHMMLLADVMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVHGRDDQIEGVTECIIMGTPIQIGTGMIKVKQRLDPPALCQGADPILA 1528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0220 1528 Gene3D - 1461 1515 - -
Acco08g0220 1528 FunFam DNA-directed RNA polymerase II subunit RPB1 560 658 - -
Acco08g0220 1528 FunFam DNA-directed RNA polymerase subunit 1463 1508 - -
Acco08g0220 1528 Gene3D - 951 1009 - -
Acco08g0220 1528 Gene3D - 1010 1061 - -
Acco08g0220 1528 Pfam RNA polymerase Rpb1, domain 5 971 1463 IPR007081 GO:0003677|GO:0003899|GO:0006351
Acco08g0220 1528 CDD RNAP_III_Rpc1_C 1166 1508 IPR035698 -
Acco08g0220 1528 Gene3D RNA polymerase Rpb1, domain 3 659 832 IPR042102 -
Acco08g0220 1528 Gene3D - 476 658 - -
Acco08g0220 1528 Gene3D RNA polymerase II, clamp domain 142 264 IPR044893 -
Acco08g0220 1528 Pfam RNA polymerase Rpb1, domain 2 485 651 IPR000722 GO:0003677|GO:0003899|GO:0006351
Acco08g0220 1528 Pfam RNA polymerase Rpb1, domain 1 150 483 IPR007080 GO:0003677|GO:0003899|GO:0006351
Acco08g0220 1528 SMART rpolaneu7 376 679 IPR006592 GO:0003677|GO:0003899|GO:0006351
Acco08g0220 1528 Pfam RNA polymerase Rpb1, domain 3 654 833 IPR007066 GO:0003677|GO:0003899|GO:0006351
Acco08g0220 1528 Gene3D RNA polymerase ii 518 578 - -
Acco08g0220 1528 FunFam DNA-directed RNA polymerase subunit 833 950 - -
Acco08g0220 1528 FunFam DNA-directed RNA polymerase subunit 659 832 - -
Acco08g0220 1528 PANTHER DNA-DIRECTED RNA POLYMERASE 156 1512 IPR045867 GO:0003899|GO:0006351
Acco08g0220 1528 CDD RNAP_III_RPC1_N 160 1021 IPR035697 -
Acco08g0220 1528 Gene3D - 833 950 IPR038120 -
Acco08g0220 1528 Coils Coil 403 430 - -
Acco08g0220 1528 Pfam RNA polymerase Rpb1, domain 4 859 964 IPR007083 GO:0003677|GO:0003899|GO:0006351
Acco08g0220 1528 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 144 1513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0220 Acco-ChrAcco08 1545167 1568989 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco08g0220 08 1545167 1568989 Acco08g0220 08 1545167 1568989 ECH