Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0182 ATGTTTGCTGTCGGCTATCGAGTTTCCCTGTTTCTTCACAATCTTGGAGCTCCCTCTCAATTCCCTCTCGTCGGAGATATTTCTGTTTTCCTCCGTCGGTTGATGGCATCGCAAGCTAGTCTTCTCCTTCAGAAGCAGCTAAAAGATCTTTGCAAAAACCCTGTTGACGGCTTCTCCGCTGGTTTAGTAGATGAAACCAACGTATTCGAATGGAGTGTCACGATAATTGGACCTCCCGATACTCTTTATGAGGGAGGATTCTTCAATGCTATAATGAGTTTTCCATCAAATTACCCGAACAGCCCACCAACTGTGAAATTCACTTCAGAGATATGGCATCCAAATGTATATCCTGATGGACGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGGATCCAAATGGATATGAACTTGCAAGTGAGCGCTGGACACCTGTTCATACAGTAGAGAGTATAGTTTTGAGTATCATTTCTATGCTTTCCAGTCCAAATGATGAATCTCCAGCAAATGTTGAAGCTGCTAAGGAGTGGAGAGACAGGAGAGACGATTTCAAGAAGAAGGTTGGCCGCTGTGTGAGGAAATCACAAGAAATGCTGTGA 603 0.4395 MFAVGYRVSLFLHNLGAPSQFPLVGDISVFLRRLMASQASLLLQKQLKDLCKNPVDGFSAGLVDETNVFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTSEIWHPNVYPDGRVCISILHPPGEDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRKSQEML 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0182 200 SMART ubc_7 41 198 - -
Acco08g0182 200 Pfam Ubiquitin-conjugating enzyme 43 192 IPR000608 -
Acco08g0182 200 SUPERFAMILY UBC-like 37 196 IPR016135 -
Acco08g0182 200 CDD UBCc 51 193 IPR000608 -
Acco08g0182 200 FunFam ubiquitin-conjugating enzyme E2 7 36 200 - -
Acco08g0182 200 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 37 197 - -
Acco08g0182 200 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 38 198 IPR000608 -
Acco08g0182 200 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 112 127 IPR023313 -
Acco08g0182 200 Gene3D Ubiquitin Conjugating Enzyme 35 200 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0182 Acco-ChrAcco08 1223499 1227390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0182 45 165 Miscellaneous Gene Families AT3G17000 31.538 9.85e-13 63.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3860 01 54279217 54282817 Acco08g0182 08 1223499 1227390 CCT