Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g1232 ATGTTCTTCTCTCTCTACCCCTACTTTCTCTCATCCTCTTCCTTCCTCTTCTTCTTCATCTTCTTCGCTTCGCCATTACAATGCATTCTCTCAAGAACTCTACAACACCACCACTTGTCGTTCGCTGCTTCAATACCCACAACAATCTCCATTTCCGACGAACGAGGCTTCCAACGCTTTGCCCAAGCTTCAAGAGGCAGCCACATCACTGGCATTTCACATATCAAAAGATACTTTACACATTTTGGCTATCTTCCATTGCAGAACATTACTAGTTTGTCTGATGATTTCGACAAGGGATTTGAGTCGGCACTTGTTCAATACCAACGGAACCTCGGCCTTGTCGTCACGGGCAGGCTCGACTCTGACACACTCAACCAGATCGTGACACCGAGATGCGGCGTGCCAGACATGGTGCATGGTGGTCATCATCATCATAATGGCTTGCATTCTACAAAAAATTTCATGTATTTTCCTGGCAAACCCCGGTGGGTACGTTCGATGCCGATGACTCTCACGTACGCTATCTCACCGGAGAACATGATTCGGAACCTGAGCTTAAGGGAGATAAAAGAAGCGTTTAAAAGAGCGTTCTCGAGGTGGGCTTCGGTGATTCCGGTGAGTTTCATGGAGGCTGAAGACTACGCTTTCGCAGATATCAAAATAGGGTTTTACAGTGGCGACCATGGAGACGGAGAGCCATTCGACGGCATACTAGGCGTGCTGGCTCATTCATTCTCGCCGGAGAGCGGGAGGCTCCACCTGGACGCAGCTGAGACGTGGGCAGTGAATTTCCGGTCGGAGAAATCACCGGTGGCGGTGGATTTGGAGTCGGTGGCAACGCATGAGATTGGGCATTTGTTAGGGTTATCTCATAGCGCAATGAAAGAGGCTGTGATGTATCCAAGTTTGAAGCCAAGAGATCAGAGAGCAGAACTGAACATGGACGACATTAAAGGAGTTCAATCTCTTTATGGATCGAACCCCAATTTTAAATACGAGTCGTCTTCAGAATCTGATATGTCTGCCAATGAAGCTTCCGATTTGGTGGGAGGCAAATCTTTGAGGATCTTTCTGGGTTGTTTCATCATGTTTTCTTTTGTTCATATTTTTGGTTTATGTCTATAG 1128 0.4707 MFFSLYPYFLSSSSFLFFFIFFASPLQCILSRTLQHHHLSFAASIPTTISISDERGFQRFAQASRGSHITGISHIKRYFTHFGYLPLQNITSLSDDFDKGFESALVQYQRNLGLVVTGRLDSDTLNQIVTPRCGVPDMVHGGHHHHNGLHSTKNFMYFPGKPRWVRSMPMTLTYAISPENMIRNLSLREIKEAFKRAFSRWASVIPVSFMEAEDYAFADIKIGFYSGDHGDGEPFDGILGVLAHSFSPESGRLHLDAAETWAVNFRSEKSPVAVDLESVATHEIGHLLGLSHSAMKEAVMYPSLKPRDQRAELNMDDIKGVQSLYGSNPNFKYESSSESDMSANEASDLVGGKSLRIFLGCFIMFSFVHIFGLCL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g1232 375 SUPERFAMILY PGBD-like 74 138 IPR036365 -
Acco07g1232 375 CDD ZnMc_MMP 163 326 IPR033739 GO:0008237|GO:0008270
Acco07g1232 375 Pfam Matrixin 168 326 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Acco07g1232 375 Pfam Putative peptidoglycan binding domain 73 127 IPR002477 -
Acco07g1232 375 SMART col_5 160 327 IPR006026 GO:0006508|GO:0008237|GO:0008270
Acco07g1232 375 Gene3D Collagenase (Catalytic Domain) 63 332 IPR024079 GO:0008237
Acco07g1232 375 FunFam Metalloendoproteinase 1 62 331 - -
Acco07g1232 375 PRINTS Matrixin signature 194 209 IPR021190 GO:0004222|GO:0006508|GO:0008270
Acco07g1232 375 PRINTS Matrixin signature 218 246 IPR021190 GO:0004222|GO:0006508|GO:0008270
Acco07g1232 375 PRINTS Matrixin signature 313 326 IPR021190 GO:0004222|GO:0006508|GO:0008270
Acco07g1232 375 PRINTS Matrixin signature 128 141 IPR021190 GO:0004222|GO:0006508|GO:0008270
Acco07g1232 375 PRINTS Matrixin signature 279 304 IPR021190 GO:0004222|GO:0006508|GO:0008270
Acco07g1232 375 PANTHER MATRIX METALLOPROTEINASE 57 331 - -
Acco07g1232 375 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 156 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g1232 Acco-ChrAcco07 21198298 21199425 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco07g1232 07 21198298 21199425 Acco07g1232 07 21198298 21199425 ECH