Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0980 ATGGCTACAGAGAGTCTCATGAGAATGGCAGAAGGAAGCCAAACTAGTAAATGGCTTTCCTCAAAGGATATTTCAGCATTTGGATCTTTCTGGAAAAATAAGTCAACAGAGGAGCTGGATATTTTCTTGAACGGACAAAAGTTCAGTCGAGGACAAGCAAACAGTATTCCAAGTCGAAGCGGTAGTGCTCCACCAAGTATGGAGGGTTCAGTTGCTGCAGTTGGAAATATGTTACCTGTGAAGGATTCTAGTCTGGTTTCAAATTCAGGAAGTTTGAGGAATGCTCTCAAGGATCACAAGTCTGAAGGAGAGCTATCTGATCCTTCTAATGTTGCTTGCCGTTCCTTGGAGCTCAACTTGGATCCCAAGCTTCTTTCACAGCCCTTGCAAAATCAACTTAGCAATGATGGAAAAAATCAAGACATCAATGGTTCACCAAAGCAAGCTTCAGAAAGCTTGTTCATCCCCAGTAACATGCCTAAACCTGGGAAACATGCAGTCCCATCAGCCAGTGTTCACAAAAGCTTGGTGGATTTGATACAGGAAGACTTCCCCCGTACCCCTTCCCCCGTATTTAACCAATCTCATTTATCAAGTAATGCTACGACTGAAGATTCAGTTGATGTTGATGTGCAAGCAATTGCTTCAAGTGTTTCATCAATAGATTTATCGAACCAGTTCGATTCAGCTACATGTTCTACTAGTGCTGTGGAGACAAGCACCCTGAACACCGATACTCGTGAACTAACATCAAATGAAGTTTCTCTTTTAAACTTCCGAAGTTCCCAGCATGCTGATGAAACCCAAAACCTGCCAGTGGATCCAAGTCCAACAGGCAACAAAGATGCAGTGCTGAAGGATTATGTATCAACTGATGGAGCTGTTAATGTGGAAGAGCATAAATTAACAGCCTGTGATGTTAGAAGAAAAAAAGTAGAACCACAACAATCTCATGGTAGGAATAAGCTAAATCAATCTCTTACTTGTGGCCATGCCCATCAATTTCCAGTTGTGGGGTCACAATTTCCTCAAGGCATAAACAATTCACAAAGTTACTTGGGAATGCTTGGTTATAGTAATTCACAATTTTCACCTCTTGGTATACAATCATCATTGCCTTCTACTGGACTTACTGCTCCTTACTATGCAGCTCCAACTGCATTTATGACTTCAGGAAACCCATTTTATCCTAATTTTCAGCCATCAGCTTTTATGTCTCCACAGTATAGTTTAGGTGGGTATGCTTTAGGTTCTACCTCTGTGGCACCATATATAGCTGGATATTCTTCTCAAAGTGACCTTCCACTTCCATCTGAAGCTGCAGGAAGCACTGACCTAAATGGTCAGGCTACCAATGCTTCTTCAGGAGGTGTTCCACTTGCTTCTGATTTTCAAAGGCGCAGCAAGATTCATGGGCAATATAGATTACCCGTACAACCTTCATATGTTAATCCAATTAATATGCAATATTATTCCCATGCTTCGAGTGATATGTATCCTGCTGCTTTTCAGCAGAATCATTTGTCATCAAGAACACTGACTGGAGGACTTTCTTGTCCCCTACCGTCCCAGCAAGATGCAGTATTTCCTTCCTATTTAAATGGTCATAAATTTCGATCTTCAGCACATGATAGCTTGCCCATTCCAAGTACAAAAAATATGGGGATCTCTGGAAGTAGCTATTATGGGAACTCCAATACCGGTGTGATGTTGCAATTTACTCCTTTGTCTCATGGTGGTCCAATTCGTCCATCCTCTCAAGATGGACAAAATGAGAATATGCCTTGTGTTTCTGTCAGAAATGCAGGATTTTCACCTGGACAGAGAGGAATTAGGGGTTTTGGTGAAACCAAGCAGCACTCTTTTCTAGAGGAACTTAAATCCATCAATCCTGAGAAGTTCAAGCTCTCTGATATAGCAGGGCGTATTGTTGAATTCAGCATTGACCAACATGGAAGTCGATTTATCCAGCAGAAGCTTGAAAACTGCAGTGCTGAAGAGAAGGCATCTGTTTTTGAAGAAATCCTTCCATATTCCTCAAAATTAATGACGGATGTGTTTGGCAATTATGTAATTCAGAAGTTTTTTGAGCATGGAAGCGCTGATCAGAGAAAAACCCTTGCAGATAAACTTTCTGGACAGATTTTATCATTAAGTTTGCAGATGTATGGCTGTCGTGTTATCCAAAAGGCCCTTGATGTTATTGAATTAGATCAGAAGACACTGCTAATGCAAGGGCTTGATGGACATGTCATGAGATGTGTGCACGATCAAAATGGGAATCATGTCATACAAAAATGTATAGAATGCATTCCTGTGGAAAAAATCAACTTTATCATATCTGCATTTCGAGGACAAGTTCAGGCTCTTTCAACTCACCCATATGGGTGTCGTGTTATTCAGAGAATTTTGGAGTATTGTTCAGATGTGCAATCTATTCAATTTATAGTGGATGAAATTCTGGAATCTGCTTTTGTCCTTGCTCAAGATCAGTACGGCAATTATGTGACTCAGCAAGTCCTGAAAAGGGGGGAAAATGAAAGAGGTCAAATTGTAAGCAAGTTGGCTGGCAAGATTGTACAATTGAGTCAGCATAAGTATGCTTCTAATGTTGTTGAGAAGTGTTTAGAGCATGGTGATGCGACTGAACGAGAAGCCTTGATTTCAGAAATAATTGGGCATCCTGGTGAAGGCCATAACTTATTGACAATGATGAAGGACCAGTACGCAAATTATGTGATCCAGAAACTTCTTGATATAAGCAATGACAGCTATCGGGAAATACTTCTCAATCAGATAAGAGATCATATAGATGCTTTGAAGAAATACACGTATGGCAAACACATTGTTGCTCGTTATGAACAACTTGTTGGTACAGCTAGCGAGGCTTAG 2892 0.407 MATESLMRMAEGSQTSKWLSSKDISAFGSFWKNKSTEELDIFLNGQKFSRGQANSIPSRSGSAPPSMEGSVAAVGNMLPVKDSSLVSNSGSLRNALKDHKSEGELSDPSNVACRSLELNLDPKLLSQPLQNQLSNDGKNQDINGSPKQASESLFIPSNMPKPGKHAVPSASVHKSLVDLIQEDFPRTPSPVFNQSHLSSNATTEDSVDVDVQAIASSVSSIDLSNQFDSATCSTSAVETSTLNTDTRELTSNEVSLLNFRSSQHADETQNLPVDPSPTGNKDAVLKDYVSTDGAVNVEEHKLTACDVRRKKVEPQQSHGRNKLNQSLTCGHAHQFPVVGSQFPQGINNSQSYLGMLGYSNSQFSPLGIQSSLPSTGLTAPYYAAPTAFMTSGNPFYPNFQPSAFMSPQYSLGGYALGSTSVAPYIAGYSSQSDLPLPSEAAGSTDLNGQATNASSGGVPLASDFQRRSKIHGQYRLPVQPSYVNPINMQYYSHASSDMYPAAFQQNHLSSRTLTGGLSCPLPSQQDAVFPSYLNGHKFRSSAHDSLPIPSTKNMGISGSSYYGNSNTGVMLQFTPLSHGGPIRPSSQDGQNENMPCVSVRNAGFSPGQRGIRGFGETKQHSFLEELKSINPEKFKLSDIAGRIVEFSIDQHGSRFIQQKLENCSAEEKASVFEEILPYSSKLMTDVFGNYVIQKFFEHGSADQRKTLADKLSGQILSLSLQMYGCRVIQKALDVIELDQKTLLMQGLDGHVMRCVHDQNGNHVIQKCIECIPVEKINFIISAFRGQVQALSTHPYGCRVIQRILEYCSDVQSIQFIVDEILESAFVLAQDQYGNYVTQQVLKRGENERGQIVSKLAGKIVQLSQHKYASNVVEKCLEHGDATEREALISEIIGHPGEGHNLLTMMKDQYANYVIQKLLDISNDSYREILLNQIRDHIDALKKYTYGKHIVARYEQLVGTASEA 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0980 963 FunFam Pumilio homolog 1 isoform 2 617 963 - -
Acco07g0980 963 MobiDBLite consensus disorder prediction 129 152 - -
Acco07g0980 963 ProSiteProfiles Pumilio RNA-binding repeat profile. 782 818 IPR001313 GO:0003723
Acco07g0980 963 CDD Pumilio 633 952 IPR033712 GO:0003723
Acco07g0980 963 ProSiteProfiles Pumilio RNA-binding repeat profile. 674 709 IPR001313 GO:0003723
Acco07g0980 963 ProSiteProfiles Pumilio RNA-binding repeat profile. 638 673 IPR001313 GO:0003723
Acco07g0980 963 ProSiteProfiles Pumilio RNA-binding repeat profile. 819 842 IPR001313 GO:0003723
Acco07g0980 963 Gene3D - 617 961 IPR011989 -
Acco07g0980 963 MobiDBLite consensus disorder prediction 50 69 - -
Acco07g0980 963 ProSiteProfiles Pumilio RNA-binding repeat profile. 746 781 IPR001313 GO:0003723
Acco07g0980 963 ProSiteProfiles Pumilio RNA-binding repeat profile. 890 931 IPR001313 GO:0003723
Acco07g0980 963 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 618 957 IPR033133 GO:0003723
Acco07g0980 963 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 256 955 - -
Acco07g0980 963 ProSiteProfiles Pumilio RNA-binding repeat profile. 710 745 IPR001313 GO:0003723
Acco07g0980 963 MobiDBLite consensus disorder prediction 50 65 - -
Acco07g0980 963 ProSiteProfiles Pumilio RNA-binding repeat profile. 854 889 IPR001313 GO:0003723
Acco07g0980 963 SUPERFAMILY ARM repeat 633 953 IPR016024 -
Acco07g0980 963 SMART pum_5 819 853 IPR001313 GO:0003723
Acco07g0980 963 SMART pum_5 782 818 IPR001313 GO:0003723
Acco07g0980 963 SMART pum_5 854 889 IPR001313 GO:0003723
Acco07g0980 963 SMART pum_5 746 781 IPR001313 GO:0003723
Acco07g0980 963 SMART pum_5 638 673 IPR001313 GO:0003723
Acco07g0980 963 SMART pum_5 710 745 IPR001313 GO:0003723
Acco07g0980 963 SMART pum_5 896 931 IPR001313 GO:0003723
Acco07g0980 963 SMART pum_5 674 709 IPR001313 GO:0003723
Acco07g0980 963 Pfam Pumilio-family RNA binding repeat 786 821 IPR001313 GO:0003723
Acco07g0980 963 Pfam Pumilio-family RNA binding repeat 681 711 IPR001313 GO:0003723
Acco07g0980 963 Pfam Pumilio-family RNA binding repeat 900 933 IPR001313 GO:0003723
Acco07g0980 963 Pfam Pumilio-family RNA binding repeat 827 854 IPR001313 GO:0003723
Acco07g0980 963 Pfam Pumilio-family RNA binding repeat 642 676 IPR001313 GO:0003723
Acco07g0980 963 Pfam Pumilio-family RNA binding repeat 714 745 IPR001313 GO:0003723
Acco07g0980 963 Pfam Pumilio-family RNA binding repeat 859 892 IPR001313 GO:0003723
Acco07g0980 963 Pfam Pumilio-family RNA binding repeat 757 781 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0980 Acco-ChrAcco07 12700978 12708110 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco07g0980 07 12700978 12708110 Acco07g0980 07 12700978 12708110 ECH