Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0786 ATGTCGTCTCTCAGTAGAGAATTGGTGTTCTTGATTTTACAGTTTCTGGAAGAGGAAAAGTTCAAAGAGACTGTTCACAAGCTCGAACAAGAGTCTGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAATGGCAATTGGGATGAGGTGGAAAGATATCTCTCTGGTTTTACAAAAGTTGATGATAATCGTTACTCTATGAAGATATTTTTTGAGATCAGGAAGCAGAAATACCTTGAAGCATTAGATAAGCATGACAGGTCCAAGGCTGTAGAAATATTAGTGAAGGACTTAAAAGTTTTTTCCACATTCAATGAAGACCTATTCAAGGAAATCACACAGCTCTTGACATTGGAGAATTTCAGGGAAAATGAACAATTGTCAAAGTATGGCGACACAAAGTCTGCTAGGGCAATCATGTTGATTGAACTTAAAAAGCTGATTGAAGCAAATCCCTTATTCCGTGACAAATTGCAGTTTCCCAACCTTAAAAACTCAAGATTACGAACTCTTATCAATCAAAGCTTGAATTGGCAACATCAGCTCTGTAAGAATCCACGGCCAAATCCAGATATTAAAACTCTTTTTGTGGATCACTCATGTGGACAACCAAATGGTGCACGGGCTCCATCACCAGCTAATAATCCGCTACTTGGATCCTTACCAAAGGCTGGAGGGTTTCCTCCTATAGGTGCACATGGGCCATTTCAACCAACTACAGCACCCGTGCCGACACCCCTGGCAGGATGGATGTCAAATCCTACCACTGTAGCTCATCCTGCAGTTTCTGGAGGAGGGGCTATAGGTCTTGGCGCTCCTTCAATCTCTGCTGCTCTGAAGCACCCTAGGACCCCTCCAACTAACCCATCTGGAGATTCTGACCACGTATCTAAGAGACCAAGGCCAATGGGAATGCCAGATGAGGTGAATCTACCAGTTAATGTGTTGCCAGCTGGCTTGCCGGGTCATGGGCATGGCCAATCTTTTAATGCCCCTGATGACTTGCCAAAGACTGTTATACGAACTCTGAACCAGGGTTCATCTCCAATGAGCATGGACTTTCATCCAGTTCAACAGAGTTTACTTCTTGTTGGTACCATTGTGGGGGACATTTCTTTGTGGGAAGTGGGCTCGAGAGAGAGATTGGTCTCAAAGAACTTTAAAGTTTGGGAACTGAGTGCCTGTTCCGTGACACTTAAGGGTGCTCTGGTCAATGATCCCAGTGTTTCCGTCAATCGTGTGATTTGGAGTCCTGATGGTGCTTTATTTGGAGTTGCTTACTCGAGGCATATTGTTCAGATATACTCATACCATGGTGGGGATGATGTGCGCCAACACCTGGAGATTGATGCTCATGTTGGTGGAGTGAATGATCTTGCATTTTCCCACCCAAATAAGCAATTGTGTGTCATAACTTGTGGTGACGATAAGACCATTAAGGTTTGGGATGCTGCTACTGGTACAAAACAGTTTACTTTTGAAGGTCACGAGGCTCCAGTCTATTCTGTTTGCCCTCATTACAAAGAAAACATTCAGTTTATATTTTCAACAGCATTAGATGGAAAAATAAAAGCATGGTTATATGACAATTTGGGTTCTCGTGTTGATTATGATGCTCCTGGCCGTTGGTGCACAACCATGGCTTACAGTGCTGATGGTACAAGGCTCTTTTCATGCGGGACAAGCAAAGATGGGGAATCCTCAATTGTTGAATGGAATGAAAGTGAAGGAGCTGTCAAAAGGACATATCAAGGATTTCGTAAAAGATCAATGGGTGTTGTGCAGTTTGATACAACCAAAAATCGATTTTTGGCTGCTGGTGATGATTTCTCCATCAAATTCTGGGATATGGACAACGTTCAACTTTTGACAACTATCGATGCAGATGGAGGACTACCAGCAAGCCCACGTATCCGTTTCAACAAGGATGGAACCCTCTTAGCTGTTTCTGCAAATGAGAATGGAATTAAAATTTTAGCCAATGCAGATGGAATAAGATTTTTACGAACATTAGAGAATTCTGCATACGAGGCATCAAGAACATCTGAAGCCATAAAGCCCACATTAAATCCAATTTCAGCTGCTGCAAGTAGTGCTGCACTTGCAGAGAGGGGCTCATCTGTAGTAGCTATTGCAGGAATGAATGGGGATGCTAGGAACATGGGTGATGTTAAACCTAGAATAGCCGAAGAATCCAATGACAAGTCAAAGATATGGAAGCTCACTGAAATCAATGAACCATCTCAATGTAGATCCTTGAAGCTGCCCGAGAATCTGAGAGTAGCCAAGATATCAAGGTTGATATACACAAATTCAGGTAATGCAATACTGGCATTATCATCGGATGCAATTCATCTGCTCTGGAAATGGCAGCGAAGTGACCGAAATTCTTCAGGCAAGGCTACTGCCAGTGTCTCACCACACTTGTGGCAACCATCAAGTGGCATCCTGATGACCAATGACATTTCTGACAGCAATCCTGAGGATGCTGTGCCTTGCTTTGCTCTCTCCAAAAATGATTCTTATGTGATGTCAGCATCAGGAGGGAAGATTTCGCTGTTCAATATGATGACTTTTAAGACAATGACAACTTTCATGCCTCCACCACCCGCAGCAACCTTTCTTGCTTTCCACCCTCAGGATAACAATGTTATAGCTATTGGGATGGATGATTCCACCATTCAGATATACAACGTCCGTGTGGATGAGGTTAAAAGTAAACTGAAAGGTCACACCAAAAAAATAACCGGCCTTGCCTTTTCTCATGCACTGAATGTGTTAGTTTCATCTGGGGCAGATGCTCAGCTTTGTGTGTGGAATACCGATGGATGGGAAAAGCAGAGGAGTAAATTCTTGCAGATTCCTGCTGGGAGGATCCCATCGGCACAGGCAGAAACCCGTGTACAGTTTCACCAGGATCAGATGCACTTCTTGGTTGTACATGAAACTCAGCTTGCCATATATGAGACAACAAAACTAGAATGTCTAAAGCAGTGGTTTCCAAGAGATTCTACTGCGCCTATATCAGCGGCAACTTTCTCATGTGATAGCCAGCTGATATATGCCAGCTTTTTAGATGCAACAGTTTATGTCTTCAGTGCATCAAACCTAAGATTTTGTTGTCGTATCAATCCTTCTTCTTATCTTTCTGCCGGTGTCAGTTCCAAAGTACAACCACTTGTTGCTGCGGCACATCCACAAGAACCCAATCAGTTTGCTCTGGGATTGTCAGATGGTGGAGTTCATGTGTTTGAGCCCCTTGAGTCTGAAGGCAAGTGGGGTGTGCCTCCTATTGAGAATGGATCAGCAAGTAATGTGGTAGCTACTTCAGCAGTAGTTTCTTCAGATCAAGCTCAGAGATAG 3372 0.4321 MSSLSRELVFLILQFLEEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFSTFNEDLFKEITQLLTLENFRENEQLSKYGDTKSARAIMLIELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPIGAHGPFQPTTAPVPTPLAGWMSNPTTVAHPAVSGGGAIGLGAPSISAALKHPRTPPTNPSGDSDHVSKRPRPMGMPDEVNLPVNVLPAGLPGHGHGQSFNAPDDLPKTVIRTLNQGSSPMSMDFHPVQQSLLLVGTIVGDISLWEVGSRERLVSKNFKVWELSACSVTLKGALVNDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGTKQFTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSMGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTIDADGGLPASPRIRFNKDGTLLAVSANENGIKILANADGIRFLRTLENSAYEASRTSEAIKPTLNPISAAASSAALAERGSSVVAIAGMNGDARNMGDVKPRIAEESNDKSKIWKLTEINEPSQCRSLKLPENLRVAKISRLIYTNSGNAILALSSDAIHLLWKWQRSDRNSSGKATASVSPHLWQPSSGILMTNDISDSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNVIAIGMDDSTIQIYNVRVDEVKSKLKGHTKKITGLAFSHALNVLVSSGADAQLCVWNTDGWEKQRSKFLQIPAGRIPSAQAETRVQFHQDQMHFLVVHETQLAIYETTKLECLKQWFPRDSTAPISAATFSCDSQLIYASFLDATVYVFSASNLRFCCRINPSSYLSAGVSSKVQPLVAAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPIENGSASNVVATSAVVSSDQAQR 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0786 1123 ProSiteProfiles Trp-Asp (WD) repeats profile. 911 952 IPR001680 GO:0005515
Acco07g0786 1123 MobiDBLite consensus disorder prediction 282 308 - -
Acco07g0786 1123 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1104 IPR027728 GO:0006355
Acco07g0786 1123 SMART WD40_4 445 486 IPR001680 GO:0005515
Acco07g0786 1123 SMART WD40_4 861 901 IPR001680 GO:0005515
Acco07g0786 1123 SMART WD40_4 904 943 IPR001680 GO:0005515
Acco07g0786 1123 SMART WD40_4 821 858 IPR001680 GO:0005515
Acco07g0786 1123 SMART WD40_4 579 619 IPR001680 GO:0005515
Acco07g0786 1123 SMART WD40_4 533 576 IPR001680 GO:0005515
Acco07g0786 1123 SMART WD40_4 339 378 IPR001680 GO:0005515
Acco07g0786 1123 SMART WD40_4 995 1036 IPR001680 GO:0005515
Acco07g0786 1123 SMART WD40_4 489 530 IPR001680 GO:0005515
Acco07g0786 1123 SMART WD40_4 399 439 IPR001680 GO:0005515
Acco07g0786 1123 Gene3D - 511 811 IPR015943 GO:0005515
Acco07g0786 1123 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 911 943 - -
Acco07g0786 1123 SMART ctlh 34 92 IPR006595 -
Acco07g0786 1123 SMART Lish 4 36 IPR006594 GO:0005515
Acco07g0786 1123 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Acco07g0786 1123 FunFam Topless-related protein 1 319 537 - -
Acco07g0786 1123 ProSiteProfiles Trp-Asp (WD) repeats profile. 597 628 IPR001680 GO:0005515
Acco07g0786 1123 Gene3D - 325 510 IPR015943 GO:0005515
Acco07g0786 1123 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Acco07g0786 1123 ProSiteProfiles Trp-Asp (WD) repeats profile. 452 495 IPR001680 GO:0005515
Acco07g0786 1123 SUPERFAMILY WD40 repeat-like 339 661 IPR036322 GO:0005515
Acco07g0786 1123 SUPERFAMILY WD40 repeat-like 829 1089 IPR036322 GO:0005515
Acco07g0786 1123 ProSitePatterns Trp-Asp (WD) repeats signature. 473 487 IPR019775 -
Acco07g0786 1123 Gene3D - 826 1115 IPR015943 GO:0005515
Acco07g0786 1123 Pfam WD domain, G-beta repeat 452 486 IPR001680 GO:0005515
Acco07g0786 1123 Pfam WD domain, G-beta repeat 910 943 IPR001680 GO:0005515
Acco07g0786 1123 FunFam Topless-related protein 3 730 964 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0786 Acco-ChrAcco07 9781941 9791193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0786 450 663 Miscellaneous Gene Families AT5G08390 24.312 1.11e-06 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco07g0786 07 9781941 9791193 Acco07g0786 07 9781941 9791193 ECH