Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2171 ATGGAATCGAAGCTCTTTAGCAGATTCGCGATGCAAAGTTCGATTGCGAGTAGATCCTACTACACGAGTAGGACTAGGAAACCCTCCCTCTACAATAAAATCAGTCCACTTGGGAGCCCCAACACCAGCGTGGTACCTGAGCTCGAGGATTGGGTCTATAAGGGTAACAAGATCCGCGTCGCCGAGCTTCAGCGCATCGTTCGAGATCTTCGCAAGCGCAGGAGGTTCACCCAAGCCCTAGAGGTATCTGAGTGGATGAATAAGAATGGTGTATGCATATTTTCACCCACTGAACATGCTGTGCATTTGGATCTTATGGGCAAAGTTCATGGATATACTTCTGCTGAAGGCTATTTTAATAGCTTGAAAGAAGAAGATAAAAATAACAAGACATATGGTGCTCTTTTGAATTGCTATACACGGCAGCGCCAAACTGAGAAGGCCCTCTCCCATCTGCAGAAAATGAAGGAGTTGGGGCTTGCTTCATCACCTCTAAGTTACAATGATATTATGTGTCTATACACCAACATTGGTCAGCTTGAGAAGGTCCCTGAAGTGCTAGTCGAGATGAAAAAGAACAATGTTTTGCCTGACAACTTCTCCTACAGAATCTGTATCAATGCTTTTGGTGCAAGGTCTGATATTGATGGAATTGAAAGAACACTAGAAGAGATGGAAAACCAATCTCACATTGTCATGGACTGGAACACTTACGCCGTTGTGGCTGATTTCTATATAAAAGCAGGACTTCAGAGTAAAGCAGTTGATGCCCTTAAGAAAGCAGAGGAGCGGCTGGACAAGAAGGATGGCGTTGGTTACAATTTTCTTGTTTCTCTTTATGCTCGTCTTGGAGACAAGACTGAGGTCATCAGATTATGGGAACGGGAGAAGATTGATTGTAAGAAGTGCATAAACAGAGATTTCACCACCATGTTAGAATCTCTGCTGAGGCTTGGTGAGCTGGATGAAGCTGAGAAAGTATTCAAGGAATGGGAGTCCTCTGGAAATTGTTATGATCCTCGCATCCCGGATGTTGTCATCACTGGATGCTCACAAAAAGGTTTGCACGAGAAAGCCGAAAGCATGATGAAAAGCTTACAAAAGAGGGGGAAAGCAACCATGTCGAACAGTTGGTCTGAAGTGGCAGGTGCATACCTTCACAAGGGTGAGATGGAGAAAGCATTTGACTGCTTCAAAGCAGCCCTACAGGCGGAAACTAAAGGATGGAAGCCGAATCCTAGGGTGTTCTCGGGCATAGTTAGTTGGCTTGGTGATAACGGAAGTGTTGAAGAAGTAGAAGCTCTGGTGGGCTCTCTGAGAAATCTTGTCCCAGTAAACAGAAGAATGTACAACGCCCTCATCAAGGCATATGTAAGACATGAAAAAGAAGTAGATGGGCTTTTGGATCGTATGAAGAATGATAACATTGATGAAGACGAAAGAACGAAAGAAATTCTTGGTATGAGGAAGTTGTAG 1476 0.4417 MESKLFSRFAMQSSIASRSYYTSRTRKPSLYNKISPLGSPNTSVVPELEDWVYKGNKIRVAELQRIVRDLRKRRRFTQALEVSEWMNKNGVCIFSPTEHAVHLDLMGKVHGYTSAEGYFNSLKEEDKNNKTYGALLNCYTRQRQTEKALSHLQKMKELGLASSPLSYNDIMCLYTNIGQLEKVPEVLVEMKKNNVLPDNFSYRICINAFGARSDIDGIERTLEEMENQSHIVMDWNTYAVVADFYIKAGLQSKAVDALKKAEERLDKKDGVGYNFLVSLYARLGDKTEVIRLWEREKIDCKKCINRDFTTMLESLLRLGELDEAEKVFKEWESSGNCYDPRIPDVVITGCSQKGLHEKAESMMKSLQKRGKATMSNSWSEVAGAYLHKGEMEKAFDCFKAALQAETKGWKPNPRVFSGIVSWLGDNGSVEEVEALVGSLRNLVPVNRRMYNALIKAYVRHEKEVDGLLDRMKNDNIDEDERTKEILGMRKL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2171 491 Gene3D Tetratricopeptide repeat domain 305 489 IPR011990 GO:0005515
Acco06g2171 491 ProSiteProfiles TPR repeat profile. 375 408 IPR019734 GO:0005515
Acco06g2171 491 PANTHER OS12G0527900 PROTEIN 26 478 - -
Acco06g2171 491 SUPERFAMILY TPR-like 131 411 IPR011990 GO:0005515
Acco06g2171 491 Pfam PPR repeat family 166 209 IPR002885 -
Acco06g2171 491 FunFam Pentatricopeptide repeat-containing protein mitochondrial 60 271 - -
Acco06g2171 491 Coils Coil 208 228 - -
Acco06g2171 491 Gene3D Tetratricopeptide repeat domain 213 301 IPR011990 GO:0005515
Acco06g2171 491 Gene3D Tetratricopeptide repeat domain 94 212 IPR011990 GO:0005515
Acco06g2171 491 Pfam PPR repeat 449 467 IPR002885 -
Acco06g2171 491 Pfam PPR repeat 345 370 IPR002885 -
Acco06g2171 491 Pfam PPR repeat 131 160 IPR002885 -
Acco06g2171 491 Pfam PPR repeat 308 335 IPR002885 -
Acco06g2171 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Acco06g2171 491 SUPERFAMILY TPR-like 233 476 IPR011990 GO:0005515
Acco06g2171 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Acco06g2171 491 NCBIfam pentatricopeptide repeat 131 160 IPR002885 -
Acco06g2171 491 NCBIfam pentatricopeptide repeat 166 198 IPR002885 -
Acco06g2171 491 NCBIfam pentatricopeptide repeat 308 338 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2171 Acco-ChrAcco06 16686497 16688474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2171 29 474 EF-hand Containing Proteins AT1G02150 33.189 7.42e-83 264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g2171 06 16686497 16688474 Acco06g2171 06 16686497 16688474 ECH