Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g0868 ATGCGGTGTTTTCTTTCATTGTTACTGGCCTTAGCCTCCTTACTTCTGCTGGTATCGGTTGTATACAGCTGCTTGCAAAGGAGTTTTCTTCCTCTTGAACGAGCTATTCCTTTGGGCCATCCAGTGGAACTGGAAGTACTCAGAGCGCGTGACAGAGCCAGGCATGCTCGAATCTTGAAAGATGTGGTCGGCGGTGTCGTCGACTTCTCAGTCGAAGGGACCTCCGATCCTTACGCCATCGGGTACGGGCTGTACTTTACGAAAGTGAAGCTGGGCTCTCCTCCAAGAGAATTTAGAGTCCAGATTGATACTGGAAGTGACATATTGTGGGTTGCTTGCAATGCTTGCAGTGATTGTCCTCGATCTAGTGACTTGGGGATTGAGCTCAATTTCTTTGATACAGTCAGCTCATCCACGGCCATGCTAGTGTCCTGCTCAGACCAAATATGTACTTCTGTGTTACAAAGTACTGGAACTGAATGCTCCCCTCAGATTAATCAGTGCAGCTACACTTTCCAGTATGGTGATGGAAGTGGAACATCAGGTTATTATGTATCTGATCTGATGCATTTTGACATGATGCTGGGACAATCCGTGCTTGCCAACTCTTCAGCTAATGTTGTTTTCGGGTGTAGCACCTATCAATCAGGAGAATTAACAAAAACGGATAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGTGCATTATCTATTATTTCACAGTTGTCATCAAGAGGTGTAACACCTGGGGTCTTCTCTCATTGCCTTAAAGGAGAAGGCAGTGGAGGAGGCATATTAGTTCTTGGTGAGATCTTGGAACCAAGTATTGTTTATAGCCCACTAGTCCCATCACAGCCCCATTACAACTTAAATCTTCAGAGCATTGCTGTCAATGGACAACCCCTCCCAATTGATTCAGCTGTGTTTGCAACATTTAACAACCAAGGAACTATAGTTGACTCTGGTACAACGTTGGCATACTTTGTTCAAGAAGCATATGATCCTCTAATTAATGCTATCACTGCTGCTGTGTCAGTGTCACAATTGGCGAATCCAATTATTTCAAAAGGATACCAGTGTTATCTGGTCCAAAGCAGCATAGGTGATATATTTCCTCCAGTCAGTTTAAATTTTGCCGGTGGGGCGTCCATGGTTTTAAAACCTGAACAGTACCTTCTTCGTTTTGGTTTCCTTGATGAATCTGCAATGTGGTGTGTTGGTTTCCAGAAGGTGCAAGAAGGGGTTACAATTTTAGGAGATATTGTCCTGAAAGATAAGATTTTTGTCTATGACTTGGTTCATCAACGAATTGGGTGGACTAACTATGATTGTTCCTTGTCTGTAAATGTCTCCCTGACCACGAGCAAGGATGAGTACATCAATGCAAGAAAGCGGAGTGCAAGTGGCTCACAAATGGATACTCTCACCAATTTGCTATCTGTTAGCATCGGTATTCTCATTGTGTACATATTATTTTCCTTTTCGAATGTTCCCCTGTGTCGGGATATTTGTCTTGGATTAACACTATTTTGTTCATCCTCTGTTTCTATGGCTGAAAATGACTTAATCTGTCCATTGAGCAACACTGATAACTTTTACGGGTCGATTCGATTCGATCTTCTCGTCGAAGCAGTCAGCCCAGCTAGACGGGCAACAGGAATTCTCACCTAG 1674 0.4355 MRCFLSLLLALASLLLLVSVVYSCLQRSFLPLERAIPLGHPVELEVLRARDRARHARILKDVVGGVVDFSVEGTSDPYAIGYGLYFTKVKLGSPPREFRVQIDTGSDILWVACNACSDCPRSSDLGIELNFFDTVSSSTAMLVSCSDQICTSVLQSTGTECSPQINQCSYTFQYGDGSGTSGYYVSDLMHFDMMLGQSVLANSSANVVFGCSTYQSGELTKTDKAVDGIFGFGPGALSIISQLSSRGVTPGVFSHCLKGEGSGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQPLPIDSAVFATFNNQGTIVDSGTTLAYFVQEAYDPLINAITAAVSVSQLANPIISKGYQCYLVQSSIGDIFPPVSLNFAGGASMVLKPEQYLLRFGFLDESAMWCVGFQKVQEGVTILGDIVLKDKIFVYDLVHQRIGWTNYDCSLSVNVSLTTSKDEYINARKRSASGSQMDTLTNLLSVSIGILIVYILFSFSNVPLCRDICLGLTLFCSSSVSMAENDLICPLSNTDNFYGSIRFDLLVEAVSPARRATGILT 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g0868 557 PANTHER ASPARTYL PROTEASES 16 439 IPR001461 GO:0004190|GO:0006508
Acco06g0868 557 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Acco06g0868 557 CDD pepsin_A_like_plant 85 445 IPR034161 -
Acco06g0868 557 Gene3D Acid Proteases 272 451 IPR021109 -
Acco06g0868 557 FunFam Aspartic proteinase-like protein 2 66 271 - -
Acco06g0868 557 ProSiteProfiles Peptidase family A1 domain profile. 85 441 IPR033121 -
Acco06g0868 557 FunFam Aspartic proteinase-like protein 2 272 452 - -
Acco06g0868 557 SUPERFAMILY Acid proteases 80 448 IPR021109 -
Acco06g0868 557 PRINTS Pepsin (A1) aspartic protease family signature 417 432 IPR001461 GO:0004190|GO:0006508
Acco06g0868 557 PRINTS Pepsin (A1) aspartic protease family signature 318 329 IPR001461 GO:0004190|GO:0006508
Acco06g0868 557 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Acco06g0868 557 Gene3D Acid Proteases 69 271 IPR021109 -
Acco06g0868 557 Pfam Xylanase inhibitor N-terminal 85 270 IPR032861 -
Acco06g0868 557 Pfam Xylanase inhibitor C-terminal 288 441 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g0868 Acco-ChrAcco06 5748241 5753105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g0868 83 446 Miscellaneous Gene Families AT1G44130 29.134 1.16e-44 161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1447 02 10950668 10955406 Acco06g0868 06 5748241 5753105 CCT
Acco06g0868 06 5748241 5753105 Acco06g0868 06 5748241 5753105 ECH