Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2417 ATGGCAACACCATCGTTGGACGAAGAAACCGCTAAAAATGTGATACGACAAGTTGAGTTCTACTTCAGTGACAGCAACCTTCCCAGGGACAATTTTCTCAAGAGATGTATTGATGAAAATAAAGATGGCTTGGTTAGTCTGGCTTTGATTTGTTCTTTTGCTCGGATGAGAAAACATCTTAATCTGGACGATGTAAAGCCGGATGAAGTCCCCGAAGATACTCTGAAAGCTGTTGCTGAGACTTTGAGGAAATCAGAATCGCTTAAGATCTCCGAGGATGGGAAAAAAGTTGGTAGGACAACTAAACTTCTGAAACCAGAAGAGGTAATTGAGCAGGTGGACATCAGAACAATAGCTGCATCACCATTTGAATATGATGTGAAGCGAGAAGATATTGAAGCTTTCTTTGGTCAATCTGCCAAGGTTAATAGTGTCAGACTTCCTCGCCATGTTGGAGACAAAAGGTTCTTCTGTGGCACTGCTCTCATTGAGTTTGCAGCAGAAGAAGATGTTGGGAAAGTTTTGGAGCAAAAATTGGCCTATGCAGGAGCCGAGTTAGAATTGAAATTGAAGAAAGACTATGATGCAGAGAGAGAAAAGGAGTTAGAAGAGTACTCAAATGCTGAAGCAGGCTATCCCAAGGGCTTAATTATTTCCTTCAAGCTAAAACGCATGTCGGATGTTGTTCCTCCGACACAAAATGGTGCTCATCAAGAAGCCAATGGCAACAGTAGTGTCTCTGACAAAGATGAACAAAATCCCTCAGAGGGTGTTGTTGAGGTTAATGAACAAAGGGTATCAGATAATACTGACAGTGATAAAGAACAAGTGGTCAGTGAAGGAAACGAAACTAAAGGTGAAGAAAAGATTCAAGAAAGTGAAGTAAAACTTTCAGCCCGTGCTTACAAGGACAACATGGATGTGGTGTTACGTGAGGATTTGAAGGGCATATTCGAGAAGTTTGGTTCTGTGAAGTTTATTGATTTCAAGATTGGAGAAGATTCTGGATACATCCGCTTTGAAGATCCTGAAGCTGCTCAAAAAGCTCGCGCTGCCGCAGTTCTTGCTGAGAAGGGGGGCCTGGCTGTGAAGAATTTTATTGCTACTCTAGATCCAGTGTCTGGCGATGCTGAAAGGGAATACTGGAGCCTTCTCCGTGGTGATCAAGAAAAGTTCCGAGACAATTGGAACACCAGAGGAAGGGGACGAGGAAGGCGTGGCAGAGGGGGGAAACGTGGCCGCTCTAGAGAGAATGAATCTCCAATGGGTCGCCCAAATAAAGCTCAAATTTCTCAAGAAAAAATGAATAGTCATATTTACTTTGGCTAA 1329 0.4289 MATPSLDEETAKNVIRQVEFYFSDSNLPRDNFLKRCIDENKDGLVSLALICSFARMRKHLNLDDVKPDEVPEDTLKAVAETLRKSESLKISEDGKKVGRTTKLLKPEEVIEQVDIRTIAASPFEYDVKREDIEAFFGQSAKVNSVRLPRHVGDKRFFCGTALIEFAAEEDVGKVLEQKLAYAGAELELKLKKDYDAEREKELEEYSNAEAGYPKGLIISFKLKRMSDVVPPTQNGAHQEANGNSSVSDKDEQNPSEGVVEVNEQRVSDNTDSDKEQVVSEGNETKGEEKIQESEVKLSARAYKDNMDVVLREDLKGIFEKFGSVKFIDFKIGEDSGYIRFEDPEAAQKARAAAVLAEKGGLAVKNFIATLDPVSGDAEREYWSLLRGDQEKFRDNWNTRGRGRGRRGRGGKRGRSRENESPMGRPNKAQISQEKMNSHIYFG 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2417 442 MobiDBLite consensus disorder prediction 231 265 - -
Acco05g2417 442 PANTHER LUPUS LA PROTEIN-RELATED 10 284 IPR045180 -
Acco05g2417 442 SUPERFAMILY RNA-binding domain, RBD 107 195 IPR035979 GO:0003676
Acco05g2417 442 CDD LA_like_plant 10 99 - -
Acco05g2417 442 Pfam RNA binding motif 309 401 IPR014886 GO:0003723
Acco05g2417 442 SMART la 8 100 IPR006630 -
Acco05g2417 442 ProSiteProfiles xRRM domain profile. 288 414 IPR014886 GO:0003723
Acco05g2417 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 177 IPR000504 GO:0003723
Acco05g2417 442 SMART rrm1_1 300 364 IPR000504 GO:0003723
Acco05g2417 442 SMART rrm1_1 117 189 IPR000504 GO:0003723
Acco05g2417 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 195 IPR000504 GO:0003723
Acco05g2417 442 MobiDBLite consensus disorder prediction 228 291 - -
Acco05g2417 442 MobiDBLite consensus disorder prediction 266 291 - -
Acco05g2417 442 SUPERFAMILY RNA-binding domain, RBD 311 399 IPR035979 GO:0003676
Acco05g2417 442 Gene3D - 109 206 IPR012677 -
Acco05g2417 442 ProSiteProfiles La-type HTH domain profile. 4 109 IPR006630 -
Acco05g2417 442 Gene3D - 300 401 IPR012677 -
Acco05g2417 442 Pfam La domain 14 84 IPR006630 -
Acco05g2417 442 SUPERFAMILY "Winged helix" DNA-binding domain 7 102 IPR036390 -
Acco05g2417 442 MobiDBLite consensus disorder prediction 394 442 - -
Acco05g2417 442 Gene3D - 2 104 IPR036388 -
Acco05g2417 442 MobiDBLite consensus disorder prediction 422 436 - -
Acco05g2417 442 CDD RRM1_La 117 189 - -
Acco05g2417 442 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Acco05g2417 442 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Acco05g2417 442 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Acco05g2417 442 FunFam La protein 2 6 106 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2417 05 39886748 39890259 Acco05g2417 05 39886748 39890259 ECH