Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1959 ATGGGCCAGGCTGCTTCCGCGGCTGCAATCCCTTGCCGTCGCCAAACCAGTCACAGCCACCGCTCCACGTCCAAATCCAGACCAACTCCTTTCATATATCCTATGATTTTCAATGGAAGTCACGAGTCCCCAGATGAGGCCATCCAATCAGCGCCTGATTACATCTCTGAGCTTCCCGACGAGTGTTTGGCTTGCATTTTTCAGTCATTAAACTCCGGCGACCGTAATCGCTGTTCCCTTGTGTGCCGGCGGTGGCTTCAGGTCGAGGGGCAGAGTCGTCACCGTCTCTCCCTGAACGCCCAATCAGATCTTCTCCCGCTTACCCCTTCTCTTTTTACACGTTTCGATTCCGTCACGAAGCTCGCTTTGAAATGCGACCGTAGATCCGTTAGCATTGGGGACGAAGCGTTCGTTCTTATCTCTCAACTATGCCCTAATCTCACCCGGCTGAAACTCCGTGCCTGCCGTGAACTGACGGACGCTGGCATGGAGGCCTTTGCTAAGAATTGCAGGGGTTTGAAGAAACTTTCCTGTGGATCTTGCACTTTTGGAGCTCGAGGGATGAATGCATTGCTCAATTATTGCGCCTCTATAGAAGAATTATCTATCAAGCGACTCCGGGGAGCTACCGATGTAGCATCGGTGGAGTCTATTGGACCTGGTGTTGCAGCGTCATCTCTCAAAACTATTTGTTTAAAAGAGCTATATGATGGACAATTTTTTGGGCCACTTATTCTTGGCTCGAAGAATTTAAGGACTTTGAAAATTTTCAGGTGCTCTGGTGACTGGGACAGACTTTTTCAACTCCTAGCGGATCGAGTACCAAATATAGTCGAAGTCCACCTTGAGAGGCTCCAAACAAGTGATGTTGGCTTAGAGGCAATCTCGAATTGCTCATGTCTGGAAGTTTTGCATCTTGTCAAGACTCCAGAGTGCACAGATTTGGGGCTTACGGCAATTGCAGAACAATGTAGGCTCTTAAGGAAACTTCATATTGATGGGTGGAAGACGAATCGCATAGGAGATGAAGGTCTAATAGCAGTCGCTAAATATTGCCCTTATCTTCAGGAATTGGTCCTTATTGGCGTCAATCCTACTAATGCAAGTTTGGAAATGTTGGCATCCAATTGCTTGAATCTAGAGCGGTTGGCGTTATGTGGGAGTGAAACAGTTGGTGATGTTGAAATATCGTGCATTGCAGCCAAATGCTTAGCATTGAAGAAACTATGTATTAAGAGCTGTCCTGTGTCTGACCATGGTATAAAAGCACTCGCAGCTGGTTGCCCGAATTTACTGAAAGTGAAGGTTAAGAAGTGCTCCAGTGTGACATCTGAGGGTGCAGATTGGCTGAGGTTGTTCAGGGAGTCGCTTGCTGTAAATTTAGATGCTGGGGAAACAGATCATCAGGACGCAAGTGCTAGTGATGGTGGAGCTCAAGAACATGGCCTGGAAATTCCTTCAATCCCCAGCCAGGCAGCAGCCTCTGCCAACATTGCATCAAGCAGTACTGGTCGATCAAGTTCATTCACGTCATGGCTCAGGCTTTTCCCTGGGAAAAGCTACTTAGCCTGCACTTTGAGAAAATTGTCTGGTGGTAACCGTAATTCCCGGCATAGTTAG 1620 0.4778 MGQAASAAAIPCRRQTSHSHRSTSKSRPTPFIYPMIFNGSHESPDEAIQSAPDYISELPDECLACIFQSLNSGDRNRCSLVCRRWLQVEGQSRHRLSLNAQSDLLPLTPSLFTRFDSVTKLALKCDRRSVSIGDEAFVLISQLCPNLTRLKLRACRELTDAGMEAFAKNCRGLKKLSCGSCTFGARGMNALLNYCASIEELSIKRLRGATDVASVESIGPGVAASSLKTICLKELYDGQFFGPLILGSKNLRTLKIFRCSGDWDRLFQLLADRVPNIVEVHLERLQTSDVGLEAISNCSCLEVLHLVKTPECTDLGLTAIAEQCRLLRKLHIDGWKTNRIGDEGLIAVAKYCPYLQELVLIGVNPTNASLEMLASNCLNLERLALCGSETVGDVEISCIAAKCLALKKLCIKSCPVSDHGIKALAAGCPNLLKVKVKKCSSVTSEGADWLRLFRESLAVNLDAGETDHQDASASDGGAQEHGLEIPSIPSQAAASANIASSSTGRSSSFTSWLRLFPGKSYLACTLRKLSGGNRNSRHS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1959 539 Gene3D - 54 93 - -
Acco05g1959 539 Gene3D Ribonuclease Inhibitor 214 481 IPR032675 -
Acco05g1959 539 Pfam F-box domain 55 87 IPR001810 GO:0005515
Acco05g1959 539 SUPERFAMILY F-box domain 39 88 IPR036047 GO:0005515
Acco05g1959 539 Pfam Leucine Rich repeat 144 167 IPR001611 GO:0005515
Acco05g1959 539 ProSiteProfiles F-box domain profile. 52 88 IPR001810 GO:0005515
Acco05g1959 539 SMART fbox_2 58 98 IPR001810 GO:0005515
Acco05g1959 539 SMART LRR_CC_2 377 402 IPR006553 -
Acco05g1959 539 SMART LRR_CC_2 324 351 IPR006553 -
Acco05g1959 539 SMART LRR_CC_2 195 221 IPR006553 -
Acco05g1959 539 SMART LRR_CC_2 144 169 IPR006553 -
Acco05g1959 539 SMART LRR_CC_2 352 376 IPR006553 -
Acco05g1959 539 SMART LRR_CC_2 403 427 IPR006553 -
Acco05g1959 539 SMART LRR_CC_2 170 194 IPR006553 -
Acco05g1959 539 CDD F-box_AtTIR1-like 55 93 - -
Acco05g1959 539 MobiDBLite consensus disorder prediction 10 28 - -
Acco05g1959 539 FunFam F-box protein SKIP2 90 471 - -
Acco05g1959 539 SUPERFAMILY RNI-like 105 462 - -
Acco05g1959 539 MobiDBLite consensus disorder prediction 1 28 - -
Acco05g1959 539 PANTHER UNCHARACTERIZED 57 462 - -
Acco05g1959 539 Gene3D Ribonuclease Inhibitor 106 213 IPR032675 -
Acco05g1959 539 FunFam F-box/LRR-repeat protein 3 isoform X1 54 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1959 Acco-ChrAcco05 35954990 35956609 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g1959 05 35954990 35956609 Acco05g1959 05 35954990 35956609 ECH