Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1913 ATGGCTTCCATCCTAGCTTGGCTCTCCATATTCTGTCTCTGCCTTTGCTTCTTCCCATTTTCGTCAACATCGGCTGCTCTGCTCTTTCAGGGTTTCAACTGGGAATCAAGTAACAGAAGAGGATGGTACAACTCCCTCAAAAACTCCATTTCTGACCTAGCCAATTCAGGAATTACCCACGTTTGGCTCCCTCCTCCTTCTCAATCCGTTTCTCCTCAAGGATACCTTCCGGGAAGGCTATATGATCTGGATGCCTCCAAATATGGTTCCAAGGATGAATTGAAGTCACTGATTGCAGCTTTCCATGAGAAAGGGATTAAATGCCTGGCTGACATAGTCATCAACCACAGAACTGCAGAGAGTAAGGACGGAAGAGGAATCTACTGCATCTTCGAAGGTGGCACCCCTGATTCGCGTCTTGACTGGGGCCCATCTTTCATCTGCAAAGATGACACTGCGTATTCTGACGGCACCGGAAATGCTGATAGCGGCGACCCATATGACGCCGCACCGGACATCGACCATCTCAATCCTCAAGTTCAGTCAGAGCTCTCCGATTGGATGAATTGGCTGAAGACGGAAGTAGGATTTGATGGATGGCGATTCGATTTCGTAAAGGGATATGCCCCAAGTATCACCAAGATTTACATGGAACGAACCTCGCCGGACTTTGCCGTTGGGGAAAAATGGGACACTATGCCTTCTGGGCAGGACGGGAAGCCTCAGAGTAATCAAGACGCTCATCGTGGTGCGTTGGGGAATTGGGTGGAGGAGGCCGGTGGAGCTGTCACCGCCTTTGATTTCACGACCAAAGGGATCCTTCAGGCCGCCGTACAAGGGGAGCTATGGAGGTTGAAGGACTCGAACGGGAAGCCGCCGGGAATGATCGGGACAAAGCCAGAAAATGCAGTGACCTTTATTGACAATCATGACACAGGTTCCACTCAGAAACTGTGGCCATTCCCTCAAGATAAAGTAATGCAGGGATACGCATACATTTTAAGTCATCCCGGAATACCATCAATATTCTATGATCACTTTGTGGATTGGGGGTTGAAGGAGGAGATAGGGAAATTGAGTGGGATAAGGACGAAGAACGGGATCAACGAGAAGAGCAGCGTGAAGATATTAGCAGCAGAAGCAGAACTATACATGGCAAGTATAGATGAGAAAGTGATAATGAAGATTGGATCAAAGATGGAACCAGAAGGTGCTGTTCCCTCTAACTTCCAACTCGCTGCCTCGGGCCAAGACTATGCTGTGTGGCAGAAATCTTGA 1278 0.4875 MASILAWLSIFCLCLCFFPFSSTSAALLFQGFNWESSNRRGWYNSLKNSISDLANSGITHVWLPPPSQSVSPQGYLPGRLYDLDASKYGSKDELKSLIAAFHEKGIKCLADIVINHRTAESKDGRGIYCIFEGGTPDSRLDWGPSFICKDDTAYSDGTGNADSGDPYDAAPDIDHLNPQVQSELSDWMNWLKTEVGFDGWRFDFVKGYAPSITKIYMERTSPDFAVGEKWDTMPSGQDGKPQSNQDAHRGALGNWVEEAGGAVTAFDFTTKGILQAAVQGELWRLKDSNGKPPGMIGTKPENAVTFIDNHDTGSTQKLWPFPQDKVMQGYAYILSHPGIPSIFYDHFVDWGLKEEIGKLSGIRTKNGINEKSSVKILAAEAELYMASIDEKVIMKIGSKMEPEGAVPSNFQLAASGQDYAVWQKS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1913 425 Pfam Alpha-amylase C-terminal beta-sheet domain 365 423 IPR012850 GO:0004556|GO:0005509|GO:0005975
Acco05g1913 425 SUPERFAMILY (Trans)glycosidases 26 355 IPR017853 -
Acco05g1913 425 SMART alpha-amyl_c2 364 424 IPR012850 GO:0004556|GO:0005509|GO:0005975
Acco05g1913 425 Gene3D Glycosidases 27 367 - -
Acco05g1913 425 PANTHER ALPHA-AMYLASE 28 423 - -
Acco05g1913 425 PIRSF Alpha-amylase_plant 1 425 IPR013775 GO:0004556|GO:0005509|GO:0005975
Acco05g1913 425 PRINTS Alpha-amylase signature 105 116 IPR006046 GO:0004556|GO:0005975|GO:0043169
Acco05g1913 425 PRINTS Alpha-amylase signature 197 208 IPR006046 GO:0004556|GO:0005975|GO:0043169
Acco05g1913 425 PRINTS Alpha-amylase signature 301 313 IPR006046 GO:0004556|GO:0005975|GO:0043169
Acco05g1913 425 SMART aamy 26 363 IPR006047 GO:0005975
Acco05g1913 425 Pfam Alpha amylase, catalytic domain 54 231 IPR006047 GO:0005975
Acco05g1913 425 Gene3D - 368 425 IPR013780 -
Acco05g1913 425 SUPERFAMILY Glycosyl hydrolase domain 368 424 - -
Acco05g1913 425 CDD AmyAc_arch_bac_plant_AmyA 28 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1913 Acco-ChrAcco05 35553014 35554547 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1913 1 424 Glycoside Hydrolase AT4G25000 66.197 0.0 573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g1913 05 35553014 35554547 Acco05g1913 05 35553014 35554547 ECH