Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco05g1596 | ATGTTTACAATCGGTCGCTCTGTGTCTTCGATGCGCCTGAGAAGCTTGAAAATTCTATTTCAAATCGCGCATTTCTTTTTTGCGAAGTTGTCATCCGGCGTCATGGCGGCCGCGAATGCTCCGATCGCCATGAGAGAGGCCCTAACCCTGCCAAGCGTGGGCATCAACCCGCAATTCATCACTTTTACGCATGTGACGATGGAGTCTGATAAGTACATATGCGTTCGAGAAACTTCTCCGCAGAATAGTGTGGTTATAATTGATATGAGCATGCCGATGCAACCTTTGAGAAGGCCCATTACTGCTGATTCGGCTCTTATGAATCCGAATTCCAGAATCCTTGCTTTAAAAGCCCAACTTCAAGGAACAACTCAGGATCACCTACAAATATTTAATATTGAGATGAAAACAAAGATGAAATCTTATCAGATGCCTGAGCAGGTAGTCTTTTGGAAGTGGATTACCCCTAAGATGTTGGGCATTGTGACACAGACCTCAGTATTCCACTGGTCAATTGAAGGTGACACTGAACCTGTCAAGATGTTTGAAAGAACAGCAAATTTTGCAAACAACCAAATTATTAACTATCGATGTGACCCTACAGAAAAATGGTTGGTTTTGATTGGTATTGCTCCTGGTTCCCCTGAGAAGCCACAATTGGTGAAAGGGAACATGCAACTTTTCTCTGTGGACCAGCAGCGCAGTCAAGCTCTTGAAGCACATGCTGCAGCATTTGCCCAATTGAAAGTTCCTGGAAATGAAAATCCATCTGTTTTGATTTCTTTTGCCACGAAGACATTCAATGCTGGTCAATTAGTATCCAAGTTGCATGTTATTGAGCTTGGTGCACAGCCAGGGAAACCATCATTCACAAAGAAACAGGCAGATCTTTTCTTTCCTCCAGATTTTGCGGATGACTTTCCTGTTGCAATGCAGATATCCCACAAATTCAATTTGATTTACGTGATCACCAAGCTTGGACTACTGTTTGTTTATGACTTGGAGACAGCTGCAGCAGTATATAGGAATAGGATTAGTCCAGATCCAATATTTTTGACGGCAGAAGCTTCATCGGTTGGAGGCTTTTATGCCATCAACAGGAGAGGGCAAGTGCTACTGGCTACTGTTAATGAACAAACCATTGTGAATTTTGTCAGTGGCCAATTAAACAACTTGGAGCTTGCAGTTAACCTTGCTAAAAGAGGAAATCTTCCTGGTGCTGAGAAGCTGGTTGTGGAGCGTTTTCATGAACTGTTTGCCCAGACAAAGTATAAAGAAGCAGCTGAGCTTGCTGCTGAATCTCCACAAGGAATCCTCCGCACACCCGAGACAGTTGCCAAATTTCAGAGTGTTCCTGTGCAAGCTGGGCAAACTCCTCCACTGTTGCAGTATTTTGGGACTCTCTTAACAAAAGGAAAGTTGAATGCCTTTGAGTCATTGGAATTGTCACGACTTGTTGTGAACCAGAACAAGAAAAATTTATTGGAGAATTGGTTGGCAGAAGACAAACTAGAATGCAGTGAGGAGCTTGGAGATCTTGTTAAGACTGTGGACAATGATCTGGCTTTAAAAATATATATCAAAGCCAGAGCTACTCCTAAAGTTGTCGCTGCTTTTGCTGAGAGGGGGGAGTTTGATAAAATCCTGATCTATTGTAAGCAGGTTGGTTACACACCTGACTACCTGTTCCTCTTGCAAACAATTCTCCGGACAGATCCTCAGGGTGCTGTTAACTTTGCCTTAATGATGTCTCAAATGGAGGGAGGTTGCCCAGTTGATTACAATACCATAACTGATCTGTTTCTTCAGAGGAATCTGATCCGTGAGGCAACAGCTTTTCTCTTGGATGTGTTAAAGCCAAATCTTCCAGAACATGGGTACCTTCAGACTAAGGTGTTGGAGATTAATCTGGTTACTTTCCCAAATGTAGCTGACGCAATTTTGGCGAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCTCAACTTTGTGAAAAAGCTGGTCTTTACATCCGAGCTTTGCAACATTACACAGAGTTGCCAGATATTAAGCGTGTAATTGTGAATACACATGCAATTGAGCCACAGGCACTTGTTGAGTTTTTTGGTACTCTGTCACGAGAATGGGCATTAGAGTGCATGAAAGATCTTTTGATGGTCAATCTTAGAGGCAACCTGCAGATAATTGTTCAGGTTGCTAAAGAATACTGTGAACAAATGGGCGTTGATTCGTGCATAAAGATTTTTGAGCAGTTCAGGTCATATGAAGGATTGTACTTTTTTCTGGGATCATATTTAAGCTCCAGTGAGGATCCTGACATTCACTTTAAGTACATAGAAGCTGCTGCTAAGACAGGACAAATTAAAGAGGTGGAGCGTGTGACTAGAGAATCAAATTTCTATGATCCTGAGAAAACAAAGAACTTTCTAATGGAAGCCAAGCTCCCTGATGCACGTCCTTTGATAAATGTTTGTGACCGTTTTGGATTTGTTCCAGATCTAACACATTATCTATACACAAACAACATGCTCCGTTATATTGAAGGATATGTTCAGAAGGTGAACCCAGGGAATGCTCCTTTAGTGGTTGGACAGCTGCTTGATGATGAATGTCCAGAAGATTTTATCAAAGGCTTGATCCTTTCTGTTCGTTCTTTACTTCCAGTGGAGCCCCTTGTGGAGGAATGTGAGAAGAGGAATCGGCTTCGATTGCTAACCCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAGGATGTGCATGTCCACAATGCTTTGGGTAAAATTATCATCGACAGTAACAACAATCCAGAGCATTTCCTAACCACCAACCCGTACTATGATTCTCGAGTTGTGGGCAAATATTGTGAGAAACGTGATCCTACCTTAGCTGTTGTAGCTTACAGGCGAGGACAATGTGATGATGAACTTATCAATGTCACAAATAAAAATTCCTTGTTCAAACTACAAGCCAGGTATGTGGTTGAGAGGATGGAACCTGACCTTTGGGAGAAAGTTCTTAACCCAGAAAATGCCTATAGAAGGCAACTTATTGATCAGGTTGTGTCCACTGCTTTGCCTGAAAGCAAGAGTCCTGAACAAGTTTCTGCAGCTGTCAAGGCTTTCATGACAGCTGATTTGCCTCATGAGTTGATTGAACTTCTTGAGAAGATTGTGCTTCAAAATTCTGCATTCAGTGGAAATTTCAACTTGCAAAATCTTCTTATTTTGACAGCTATAAAGGCTGATCCATCCAGAGTCATGGACTACATAAACAGACTAGATAACTTTGATGGGCCTGCAGTTGGAGAAATGGCTGTAGAAGCTCAGTTGTACGAGGAAGCTTTTGCGATATTTAAGAAGTTCAACTTGAATGTCCAAGCAGTTAATGTCTTGTTAGATAATATTCATAGCATTGATAGAGCTGTGGAGTTTGCTTTCAGAGTTGAAGAAGATTCTGTTTGGAGCCAAGTGGCCAAGGCTCAACTCAGGGAAGGGCTTGTAAGTGATGCAATTGAGTCATTTATTCGAGCAGATGATGCCACACAATTTCTGGATGTTATTCGTGCTGCTGAAGATGACAATGCTTACCATGATTTGGTGAGGTACTTGCTTATGGTAAGGCAAAAGGTAAAAGAACCCAAGGTAGACAGCGAGCTCATTTATGCATACGCAAAGATTGATAGGCTCAGTGATATTGAGGAGTTCATCCTTATGCCAAATGTGGCCAATCTTCAAAATGTTGGTGACCGGTTATATGATGAAGCCTTATATGAGGCTGCAAAAATCATATTTGCTTTTATATCTAACTGGGCCAAGTTGGCTGTCACGCTAGTGAAGTTGCAACAATTCCAAGGCGCTGTTGATGCAGCAAGGAAAGCAAACAGTTCAAAAACTTGGAAGGAAGTTTGCTTTGCTTGTGTTGATGCTGAGGAGTTTCGTTTGGCTCAAATATGTGGGCTCAACATTATTATTCAGGTGGATGACTTGGAAGAGGTCAGTGAATATTACCAGAATAGAGGTTACTTCAGTGAGCTTATTTCTCTCATGGAGAGTGGTTTAGGATTAGAGCGGGCACATATGGGCATCTTCACTGAGTTGGGAGTTCTATATGCTAGATACCGTCCTGAGAAGCTTATGGAACACATCAAACTCTTCTCAACACGCCTCAATATTCCGAAACTCATCAGAGCTTGTGACGAACAACAGCACTGGAAGGAATTGACCTATTTGTATATCCAATATGATGAGTTTGATAATGCTGCAACTACCATCATGAACCATTCTCCCGAAGCATGGGACCACATGCAGTTCAAAGACGTCATTGTCAAAGTTGCTAATGTTGAGTTATATTACAAGGCAGTTCACTTCTATTTGCAAGAGCATCCTGATCTCATCAATGATGTCCTAAATGTCCTTGCACTTCGCGTGGACCATGCACGTGTTGTTGACATAATGCGAAAGGCTGGTCACTTGCGTCTTGTGAAGCCATACATGGTTGCAGTCCAGAGCAACAATGTCTCTGCTGTTAATGAAGCATTGAATGAGATATATGTTGAGGAGGAAGACTATGATAGATTGCGTGAATCAATTGATTTGCATGATAACTTTGATCAAATAGGCCTTGCACAGAAGATTGAGAAGCATGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTACAAGAAGGCAGGCAGGTGGAAGCAGTCCATTGCCTTATCAAAGAAGGATAACCTTTACAAAGATGCCATGGAGACAGCCTCACAATCTGGTGACCGTGAACTTGCTGAGGAGTTGCTTGTATATTTCATTGAACAGGGAAAGAAGGAATGCTTCGCCTCATGCCTCTTTGTTTGTTATGATCTAATCCGGGCAGACATAGCTCTTGAACTTGCTTGGATGAACAATATGATTGATTTTGCCTTCCCATATCTCTTACAGTTCATCCGTGAGTACACTGGCAAAGTTGATGAACTGGTGAAGCACAAGATTGAAGCACAAAATGAAGTGAAGGCTAAAGAGAACGAGGAAAAGGAAGTAATCGCACAACAGAATATGTATGCTCAGTTGTTACCTCTTGCATTGCCTGCACCGCCAATGCCAGGAATGGGGGGAGGTTTTGCTCCTCCCCCTCCTCCACCTATGAGTGGAATGGGGATGCCTCCAATGCCGCCTTTTGGCATGCCACCCATGGGCAGCAGCTACTGA | 5214 | 0.4252 | MFTIGRSVSSMRLRSLKILFQIAHFFFAKLSSGVMAAANAPIAMREALTLPSVGINPQFITFTHVTMESDKYICVRETSPQNSVVIIDMSMPMQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIEMKTKMKSYQMPEQVVFWKWITPKMLGIVTQTSVFHWSIEGDTEPVKMFERTANFANNQIINYRCDPTEKWLVLIGIAPGSPEKPQLVKGNMQLFSVDQQRSQALEAHAAAFAQLKVPGNENPSVLISFATKTFNAGQLVSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKFNLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTAEASSVGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVNLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPETVAKFQSVPVQAGQTPPLLQYFGTLLTKGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERGEFDKILIYCKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGYLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYIRALQHYTELPDIKRVIVNTHAIEPQALVEFFGTLSREWALECMKDLLMVNLRGNLQIIVQVAKEYCEQMGVDSCIKIFEQFRSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMEPDLWEKVLNPENAYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIHSIDRAVEFAFRVEEDSVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDDNAYHDLVRYLLMVRQKVKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEALYEAAKIIFAFISNWAKLAVTLVKLQQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGYFSELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVIVKVANVELYYKAVHFYLQEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRADIALELAWMNNMIDFAFPYLLQFIREYTGKVDELVKHKIEAQNEVKAKENEEKEVIAQQNMYAQLLPLALPAPPMPGMGGGFAPPPPPPMSGMGMPPMPPFGMPPMGSSY | 1737 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco05g1596 | 1737 | SUPERFAMILY | ARM repeat | 1086 | 1229 | IPR016024 | - | |
| Acco05g1596 | 1737 | FunFam | Clathrin heavy chain | 35 | 411 | - | - | |
| Acco05g1596 | 1737 | SUPERFAMILY | ARM repeat | 379 | 534 | IPR016024 | - | |
| Acco05g1596 | 1737 | FunFam | Clathrin heavy chain | 936 | 1087 | - | - | |
| Acco05g1596 | 1737 | Gene3D | - | 32 | 411 | IPR016025 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Acco05g1596 | 1737 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1176 | 1317 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | SUPERFAMILY | ARM repeat | 491 | 827 | IPR016024 | - | |
| Acco05g1596 | 1737 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 881 | 1020 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | SUPERFAMILY | ARM repeat | 1230 | 1565 | IPR016024 | - | |
| Acco05g1596 | 1737 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1471 | 1614 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 734 | 876 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | PIRSF | CHC | 37 | 1720 | IPR016341 | GO:0016192|GO:0032051|GO:0071439 | |
| Acco05g1596 | 1737 | Coils | Coil | 1511 | 1531 | - | - | |
| Acco05g1596 | 1737 | Coils | Coil | 1651 | 1685 | - | - | |
| Acco05g1596 | 1737 | FunFam | Clathrin heavy chain | 1231 | 1570 | - | - | |
| Acco05g1596 | 1737 | Pfam | Region in Clathrin and VPS | 884 | 1016 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | Pfam | Region in Clathrin and VPS | 1180 | 1315 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | Pfam | Region in Clathrin and VPS | 1027 | 1165 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | Pfam | Region in Clathrin and VPS | 591 | 724 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | Pfam | Region in Clathrin and VPS | 1326 | 1465 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | Pfam | Region in Clathrin and VPS | 1474 | 1613 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | Pfam | Region in Clathrin and VPS | 735 | 874 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1322 | 1468 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | FunFam | Clathrin heavy chain | 1088 | 1230 | - | - | |
| Acco05g1596 | 1737 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1027 | 1172 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 585 | 731 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | PANTHER | CLATHRIN HEAVY CHAIN RELATED | 38 | 1532 | - | - | |
| Acco05g1596 | 1737 | Pfam | Clathrin, heavy-chain linker | 378 | 401 | IPR015348 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Acco05g1596 | 1737 | SUPERFAMILY | Clathrin heavy-chain terminal domain | 39 | 377 | IPR016025 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Acco05g1596 | 1737 | FunFam | Clathrin heavy chain | 493 | 821 | - | - | |
| Acco05g1596 | 1737 | Gene3D | - | 1576 | 1672 | - | - | |
| Acco05g1596 | 1737 | FunFam | Clathrin heavy chain | 1576 | 1672 | - | - | |
| Acco05g1596 | 1737 | Pfam | Clathrin propeller repeat | 189 | 231 | IPR022365 | - | |
| Acco05g1596 | 1737 | Pfam | Clathrin propeller repeat | 54 | 89 | IPR022365 | - | |
| Acco05g1596 | 1737 | SMART | CLH_2 | 734 | 876 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | SMART | CLH_2 | 1322 | 1468 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | SMART | CLH_2 | 1471 | 1630 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | SMART | CLH_2 | 1176 | 1317 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | SMART | CLH_2 | 881 | 1020 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | SMART | CLH_2 | 585 | 727 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | SMART | CLH_2 | 1027 | 1172 | IPR000547 | GO:0006886|GO:0016192 | |
| Acco05g1596 | 1737 | Gene3D | Tetratricopeptide repeat domain | 936 | 1090 | IPR011990 | GO:0005515 | |
| Acco05g1596 | 1737 | Gene3D | Tetratricopeptide repeat domain | 1231 | 1570 | IPR011990 | GO:0005515 | |
| Acco05g1596 | 1737 | Gene3D | Tetratricopeptide repeat domain | 1091 | 1230 | IPR011990 | GO:0005515 | |
| Acco05g1596 | 1737 | SUPERFAMILY | ARM repeat | 935 | 1101 | IPR016024 | - | |
| Acco05g1596 | 1737 | Pfam | Clathrin-H-link | 403 | 468 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco05g1596 | Acco-ChrAcco05 | 32385112 | 32397256 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Acco05g1596 | 05 | 32385112 | 32397256 | Acco05g1596 | 05 | 32385112 | 32397256 | CCT | |
| Acco05g1596 | 05 | 32385112 | 32397256 | Acco05g1596 | 05 | 32385112 | 32397256 | ECH |