Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1391 ATGGCGACTGAACCTTCTCCTTCACTTCCTCCTTACCCAGAGATGATAATGAAAGCTCTGGAGGCTCTGAATGAACCGACTGGTTCGAGCAGGTCGTCGATCGTGAAGCACATAGAGGCCACCTACGGGGAGTTACCGGCCAGTCACTCGACGTTGCTTTCTCACCACCTGAACAAGATGAAGGAGACTGGGGAGCTTGTGTTCGCGAAGAACAACTACATGAAGCCCGACCCAAATGCCCCACCCAAGAGAGGTCGGGGCAGGCCACCCAAGCCCAAGGCTCCGCTGCCTCCGGGTACTGTCCTATCTCCTCCAAGGCCCAGAGGCCGTCCACCCAAGGACCCAAGCGCCCTACCCAAGCCGAAAACCTCAACCAGCAGTGGAAGACCCAGAGGAAGGCCCAAGAAGGCGGCCCGGACCTCACCGGAGAGTGGGCCTGTTGTGAGTAGGGGAAGAGGCCGGCCACCGAAGGAGAAGCCTGCATTGTCCGAAGTGAGCGTTGAACAATAG 510 0.5843 MATEPSPSLPPYPEMIMKALEALNEPTGSSRSSIVKHIEATYGELPASHSTLLSHHLNKMKETGELVFAKNNYMKPDPNAPPKRGRGRPPKPKAPLPPGTVLSPPRPRGRPPKDPSALPKPKTSTSSGRPRGRPKKAARTSPESGPVVSRGRGRPPKEKPALSEVSVEQ 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1391 169 PRINTS High mobility group protein (HMGY) signature 81 93 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Acco05g1391 169 PRINTS High mobility group protein (HMGY) signature 117 136 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Acco05g1391 169 Gene3D - 5 87 IPR036388 -
Acco05g1391 169 Pfam linker histone H1 and H5 family 10 70 IPR005818 GO:0000786|GO:0003677|GO:0006334
Acco05g1391 169 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 8 77 IPR005818 GO:0000786|GO:0003677|GO:0006334
Acco05g1391 169 MobiDBLite consensus disorder prediction 68 169 - -
Acco05g1391 169 PANTHER HISTONE H1 8 160 - -
Acco05g1391 169 SMART AT_hook_2 128 140 IPR017956 GO:0003677
Acco05g1391 169 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Acco05g1391 169 SMART AT_hook_2 149 161 IPR017956 GO:0003677
Acco05g1391 169 SMART AT_hook_2 105 117 IPR017956 GO:0003677
Acco05g1391 169 MobiDBLite consensus disorder prediction 91 118 - -
Acco05g1391 169 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677
Acco05g1391 169 PRINTS AT-hook-like domain signature 126 136 IPR017956 GO:0003677
Acco05g1391 169 PRINTS AT-hook-like domain signature 103 114 IPR017956 GO:0003677
Acco05g1391 169 FunFam HMG-Y-related protein A 4 86 - -
Acco05g1391 169 SMART h15plus2 6 72 IPR005818 GO:0000786|GO:0003677|GO:0006334
Acco05g1391 169 SUPERFAMILY "Winged helix" DNA-binding domain 5 84 IPR036390 -
Acco05g1391 169 MobiDBLite consensus disorder prediction 152 169 - -
Acco05g1391 169 Pfam AT hook motif 128 138 IPR017956 GO:0003677
Acco05g1391 169 Pfam AT hook motif 150 160 IPR017956 GO:0003677
Acco05g1391 169 Pfam AT hook motif 83 91 IPR017956 GO:0003677
Acco05g1391 169 Pfam AT hook motif 105 116 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1391 Acco-ChrAcco05 29370735 29371400 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g1391 05 29370735 29371400 Acco05g1391 05 29370735 29371400 CCT
Acco05g1391 05 29370735 29371400 Acco05g1391 05 29370735 29371400 ECH