Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0050 ATGGATCCGCATCGTCGCCGCCGCCCACCTCCAGCCACCCCTCATGAAGGCGCCGCCGATGCTTCTCCAAAGCTTCTAAAGAAGCCTTCCTCCGCCGTCGCCAACGGCGTCCATCAAACCGCGTCTCAGACTCCTAAAGCTTCCGATGCCCTGCCTCTGCCGCTGTACCTTACCAATGCTGTATTCTTCACGCTCTTCTTCGCCGTTGCGTACTATCTCCTCCACCGCTGGCGTGACAAGATCCGGAACTCTACGCCTCTTCACGTTGTGACCTTGTCTGAGATTGCTGCCATTGTGTCCCTCATCGCGTCTTTTATTTACCTTCTCGGGTTTTTCGGCATTGACTTCGTACAGTCTTTCATCTCGCGTGCTTCTCACGATGTCTGGGACCTCGAGGACGACGCCGGCGAGGCTGATGCTGTTGCTGAGTCTCGCTCTCACAACCACCACCACCGTCGTGATTTCGTCATCGAGCAACCGGTTCCTAGATTGATGGTGGATCCCGATCCCTTGGTTTCGTCTCTTTCCTCTGAGGAAGATGAGAAGATTGTGCAGTCTGTAATAGATGGTACGATTCCTTCATACTCACTCGAGTCCAAGCTCGGGGACTGTAAGCGGGCGGCGGCCATTCGACGTGAGGCCTTGCAGAGGATGTCTGGGAGATCTCTTCAGGGATTACCGTTGGAGGGGTTCGATTACGATTCAATTTTGGGGCAGTGCTGCGAAATGCCGGTTGGTTACGTGCAAATTCCGGTGGGAGTGGCTGGCCCGTTGTTGCTTGATGGATTTGAGTATACTATACCAATGGCAACCACGGAGGGGTGCTTGGTGGCGAGCACGAACAGAGGCTGTAAAGCTATTTATGCCTCCGGCGGATCTACCAGCGTAGTGCTGAGGGATGGGATGACCAGAGCGCCTGTTGTAAGGTTCGCTACGGCCAAAAGGGCTGCGGAGTTGAAGTTCTATCTGGAGGATCCTCTCAATTTTGAAACCTTGGCCGTCGTTTTCAATAAGTCAAGTAGATTTGCTAGGCTTCAAAGTATTCATTGTTCTATAGCCGGAAGGAACCTTTACATGAGATTCAGCTGTAGCACAGGTGATGCCATGGGGATGAACATGGTTTCCAAGGGCGTGCAGAATGTTCTTGATTTCCTTCAAAATGATTTCTCGGACATGGATGTCATTGGCATCTCTGGGAATTATTGTTCGGACAAGAAGCCTGCTGCTGTAAATTGGATTGAGGGGCGCGGAAAGTCAGTTGTTTGCGAAGCAATTATTAAAGAAGAGGTGGTTAAGAAGGTACTGAAGACCAACGTCGCTGCCTTAGTGGAACTTAACATGCTTAAAAACCTTGCTGGTTCTGCTGTTGCTGGGGCTCTTGGTGGATATAATGCTCATGCCAGCAATATTGTCTCTGCCATTTTTATAGCCACTGGTCAAGATCCAGCGCAAAATATTGAGAGCTCTCATTGCATAACCATGATGGAAGCCGTCAATGATGGGAGGGACCTTCATATCTCAGTGTCCATGCCTGCCATTGAGGTGGGTACAGTTGGAGGTGGTACTCAGCTAGCATCTCAGTCTGCTTGCTTGAATTTATTGGGTGTGAAGGGCGCGAGCAAGGAGTCACCAGGATCAAACGCTAGACTGTTGGCCGCCATTGTTGCTGGTTCAGTTTTGGCAGGAGAGCTATCTCTGATGTCTGCCATTGCTGCAGGTCAGCTTGTAAAGAGTCACATGAAGTACAATAGGTCAAGCAAGGATGTCTGTAATCTGGCTAGTTGA 1785 0.507 MDPHRRRRPPPATPHEGAADASPKLLKKPSSAVANGVHQTASQTPKASDALPLPLYLTNAVFFTLFFAVAYYLLHRWRDKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRASHDVWDLEDDAGEADAVAESRSHNHHHRRDFVIEQPVPRLMVDPDPLVSSLSSEEDEKIVQSVIDGTIPSYSLESKLGDCKRAAAIRREALQRMSGRSLQGLPLEGFDYDSILGQCCEMPVGYVQIPVGVAGPLLLDGFEYTIPMATTEGCLVASTNRGCKAIYASGGSTSVVLRDGMTRAPVVRFATAKRAAELKFYLEDPLNFETLAVVFNKSSRFARLQSIHCSIAGRNLYMRFSCSTGDAMGMNMVSKGVQNVLDFLQNDFSDMDVIGISGNYCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVAALVELNMLKNLAGSAVAGALGGYNAHASNIVSAIFIATGQDPAQNIESSHCITMMEAVNDGRDLHISVSMPAIEVGTVGGGTQLASQSACLNLLGVKGASKESPGSNARLLAAIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSKDVCNLAS 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0050 594 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 569 582 IPR023076 GO:0004420
Acco05g0050 594 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 360 374 IPR023076 GO:0004420
Acco05g0050 594 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 301 417 - -
Acco05g0050 594 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 267 287 IPR002202 GO:0004420|GO:0015936
Acco05g0050 594 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 358 376 IPR002202 GO:0004420|GO:0015936
Acco05g0050 594 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 398 423 IPR002202 GO:0004420|GO:0015936
Acco05g0050 594 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 449 475 IPR002202 GO:0004420|GO:0015936
Acco05g0050 594 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 503 524 IPR002202 GO:0004420|GO:0015936
Acco05g0050 594 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 240 261 IPR002202 GO:0004420|GO:0015936
Acco05g0050 594 CDD HMG-CoA_reductase_classI 181 584 IPR004554 GO:0004420|GO:0005515|GO:0008299
Acco05g0050 594 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 176 250 - -
Acco05g0050 594 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 301 417 IPR009023 -
Acco05g0050 594 Gene3D - 171 250 IPR023282 GO:0004420
Acco05g0050 594 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 180 584 IPR002202 GO:0004420|GO:0015936
Acco05g0050 594 MobiDBLite consensus disorder prediction 1 24 - -
Acco05g0050 594 Pfam Hydroxymethylglutaryl-coenzyme A reductase 208 584 IPR002202 GO:0004420|GO:0015936
Acco05g0050 594 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 406 579 - -
Acco05g0050 594 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 515 522 IPR023076 GO:0004420
Acco05g0050 594 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 176 573 IPR009029 GO:0015936|GO:0016616
Acco05g0050 594 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 180 584 IPR004554 GO:0004420|GO:0005515|GO:0008299
Acco05g0050 594 Gene3D - 301 417 IPR009023 -
Acco05g0050 594 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 36 588 IPR002202 GO:0004420|GO:0015936
Acco05g0050 594 Gene3D - 251 579 IPR023074 GO:0004420
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0050 1 589 Lipid Metabolism Gene Families AT1G76490 73.356 0.0 900
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g0050 05 652178 655518 Acco05g0050 05 652178 655518 ECH