Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2616 ATGCTGAGAGACGGAGGCGACATCAGATTTCCGATCTCGCTTCGTGCTGATGTCCATGCTGAGAGACGGAGGCGACATCAGATTTTCGATCTCGCTTCGTGCTTGTTGACCAATTCGATACGCGAATTCACCCGTTGGCTTTATACTATTGTGCTTATTCTGGAAGGCCCCATAATCGCTGTGCTGCATCTTGAGCCATCTATTTATGATATGGGGCACAACAAGCGAAAGAGAGGCATGGAAGTGGATGTTTTGTCAAGAGTAATAGACTCTGTTGTTAAGGTGTTTTGTGCACACTCCCCACCTAATTTTTCTCGACCGTGGCAGAGGATGAAGCCGTACAGCTCTAGCAGTAGTGGGTTTGTTATTAGCGAGAAGAGGGTGCTCACCAATGCCCATTCAGTGGAGCACTGTACCCTAGTCATGCTCAAGAAACGTGGTTCCGATACCAATTACTTAGCCACTGTGCTGGCCATTGGGACTGAGTGTGACATCGCCATACTTACGGTTGCAGATGATGAATTTTGGCATGGAATGTTACCTATAAAGTTCGGGACTTTGTCCGCACTGCAAGATGCAATTACTGTTGTTGGTTATCCTCTTGGTTGTAACACTATTTCGGTGACTAATGGCGTTGTATCTCACATTCAGATTATATCTTATATCCATGGTTGTGCTGAACTTCTAGGATTACAGATAGATGTGGCTTTAAACTCAGGTAATTATGGTGGGCCTGCCTTTAATGATGCAGGAAAATGTGTGGGCATTGCATTTCAGTCCATAGATGAAAAAAATATAGGTCATCTCATTCCGACGCCAGTTATCAAGCATTTCATTCGTGATTATGATAAGAATAGAGCATATACAGGAGTCCCTGCCCTTGGGATTGAGTGGCAGAAAATGAGAAATCATGAACTGAGAATGGCAATGGGCATGGGATCTGATCACAAGGGGGTACGTATTAGAAGAATAGATGCAACTGCACCAGCATATGGAGTTTTGAAACCATCAGATGTTATTCTTAGCTTTGATGGGGTTGATGTCGCCAATGATGGGACAGTTTTATTTCGACTTCAAGGGCGCATTAATTTCAGTTATCTTATATCTCAGAAATACACTGGGGATAACACAGTAATTAATGTGTTGCGAAATTCAGAGATCTGCAAATTTGACATTACACTTGGTAGTCTCAAAAAGCTCATTCCGGCACATAGCGAGGGCAGGCCTCCCTCATATTATATCATTGCAGGATTTGTTTTTACAACCGTCTCAATTCCATATCTTCGTTCTAAGTATGGAGAGGATTATAAGATCAAGGCTCCCATCAAGATTTTGGATAAACTAGATTCAATGCCAGAGTTACCAGACGAGCAACTTGTTGTGATCTCTCAGGTGCTGGTAGCTGCTATAAACTTTGGGTATGAAGATATTATTGATAATCGGGTACTTGCTTTTAACGGTAAACCTGTTAAACACCTGAAGAGCTTGGCCAGCATGGTTGAGAACTGCAATGATGAACATCTAGAATTCAGTCTAGAGGATGATCAGATAGTGGCGCTTCGGACAGCTAGGGCTAAAGATGCTACTCTCAATATTCTTGACACATACTGCGTTTTGTCAGCCATGTCAGACGATCTCAAGGAATGA 1647 0.4293 MLRDGGDIRFPISLRADVHAERRRRHQIFDLASCLLTNSIREFTRWLYTIVLILEGPIIAVLHLEPSIYDMGHNKRKRGMEVDVLSRVIDSVVKVFCAHSPPNFSRPWQRMKPYSSSSSGFVISEKRVLTNAHSVEHCTLVMLKKRGSDTNYLATVLAIGTECDIAILTVADDEFWHGMLPIKFGTLSALQDAITVVGYPLGCNTISVTNGVVSHIQIISYIHGCAELLGLQIDVALNSGNYGGPAFNDAGKCVGIAFQSIDEKNIGHLIPTPVIKHFIRDYDKNRAYTGVPALGIEWQKMRNHELRMAMGMGSDHKGVRIRRIDATAPAYGVLKPSDVILSFDGVDVANDGTVLFRLQGRINFSYLISQKYTGDNTVINVLRNSEICKFDITLGSLKKLIPAHSEGRPPSYYIIAGFVFTTVSIPYLRSKYGEDYKIKAPIKILDKLDSMPELPDEQLVVISQVLVAAINFGYEDIIDNRVLAFNGKPVKHLKSLASMVENCNDEHLEFSLEDDQIVALRTARAKDATLNILDTYCVLSAMSDDLKE 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2616 548 PANTHER - 79 546 - -
Acco04g2616 548 Gene3D - 400 548 IPR046449 -
Acco04g2616 548 Gene3D - 290 399 IPR036034 GO:0005515
Acco04g2616 548 CDD PDZ_serine_protease 292 386 - -
Acco04g2616 548 Pfam Trypsin-like peptidase domain 119 256 - -
Acco04g2616 548 SUPERFAMILY PDZ domain-like 317 399 IPR036034 GO:0005515
Acco04g2616 548 Gene3D - 177 284 IPR043504 -
Acco04g2616 548 PRINTS HtrA/DegQ protease family signature 120 132 IPR001940 GO:0004252|GO:0006508
Acco04g2616 548 PRINTS HtrA/DegQ protease family signature 148 168 IPR001940 GO:0004252|GO:0006508
Acco04g2616 548 PRINTS HtrA/DegQ protease family signature 227 244 IPR001940 GO:0004252|GO:0006508
Acco04g2616 548 PRINTS HtrA/DegQ protease family signature 333 345 IPR001940 GO:0004252|GO:0006508
Acco04g2616 548 PRINTS HtrA/DegQ protease family signature 190 214 IPR001940 GO:0004252|GO:0006508
Acco04g2616 548 FunFam protease Do-like 9 177 284 - -
Acco04g2616 548 SUPERFAMILY Trypsin-like serine proteases 82 285 IPR009003 -
Acco04g2616 548 Gene3D - 72 175 IPR043504 -
Acco04g2616 548 Pfam PDZ domain 401 545 IPR041517 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2616 Acco-ChrAcco04 43045852 43051634 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2616 04 43045852 43051634 Acco04g2616 04 43045852 43051634 ECH