Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g2123 ATGCTGAGTTCTAAAAATGAAGGAGATATTATTTATGATGATGATGTATTCTTCGACTCAATACATTATCTGTTACCTCAAGAGTTTTCTGATTTAGGTTCAAACGAGCTGGATTATGAGATTTGGGTGAATGAACCTCAAAGTGTGAAGGAAAGACGACGACGTTTTCTTGAGGGAATGGGTTTTTCTGGTTTATCAGATATGTCTTCAAGAACATCCTTGGAACCAGAGAGAAGAATTAGGGACAACAATAATGGAGCTATCTTAAATAATGTAGTTGAGAAAGAAACTTCGGAAGCAAGCATGTTTGATGAAATGACAATGTTTCCTGAAGAAGACGTAAGCTTTCATGAAACCAGACACACAGAAGCTGAAGTCCAACAAAGACATGTGGATTTAGATATGGAACAGAAGAAGAAGAAGAAATGGTGGGAGAGATTTGTGAACAAGAAAAAAGAAAGTGGGGCAAATAAGAGTCATAGGATAAAAGTGAGGCAGAACAAGAAGAGGTGGAAGGAGTTAAGTGGGTTATATGTTGGACAAGAGATTAGAGCTCACAATGGCATTATATGGACTATGAAATTCAGTTCCAATGGGCAGTATCTTGCTACGGGAGGCGAAGATGGAGTCGTAAGAATATGGCGTGTCGTGTTACAGGACATATCTAGTGATTGTTTCAATGCAGAGGACAGTGTTGTTACCAAAGTGAAACAAGACATGTTCTGTTCTTGGAAGAAACAGTCAGGTCAAAGAAACCGCCTTGTCCTTCCAAACAAGGTTTTTCAAATTGAGGAATCACCAATGCAAGAATTCTATGGTCATTCCAGTGATGTCTTGGACTTAGCATGGTCTAATTCAGATATTCTTCTTTCATCTTCCATGGATAAAACCGTCCGTTTGTGGCAGATTGGATGTGATCAATGCTTAAGTGTTTTTCGTCATAATGATTATGTGACATGCATTCAAGTGAATCCAGTTGATGGAGATTACTTCATAAGTGGGTCCATTGATGGCAAAGTCAGAATATGGGGGGTGCATGAAGAGAGGGTTGTTGACTGGGCAGATATACATGAAGTAATAACTGCCATAAGTTACAAGCCAGATGGGAAAGGATTTGTAGTCGGCTCCATTTCAGGAACTTGCCGCTTTTATGTTATTTCAGATGAACATTGCAGATTTGAGACACAGATTCATGTTGATGGAAAGAAGAGATCAAGGGGCAACAAAATTAGCGGAATTCAGTTTTCCCAGGAGAGACATCAGAGAGCTCTGATCACATCAGAAGATTCTAAATTTTGCTTATTGGAAGGGATTGATGTTGTCCACAAATACAGAGGTCTTCCTAGGTCAGGAAGTCAGATGTGTGGTTCATTCACAAGTGGAAAACACATAACTTCAGTTGGAGAGGATTCTCATGTGTACATTTGGAACTCATGTGACTTACAAAACCCATCACCTAAACACAAAAAATCCACTGGGTTTTGTGAATACTTTTTCTCAAAAGGTGTTGTTGTAGCAGTACCTTGGTCAGGCATGAATACAGAACAAATTGTCCCTACTGTTTTAACACAGTACTGTTCTTCAGACTTGTTACAACCTCAAATGCTTGAAGATAGAGGAAGAGGACAATGTTTTTCTCACAGCAATTGGTTCTCGGTTGATCACACGTGTCGGGGTTCTGTGACGTGGCCCGAAGAGAAGCTTCCTCCGTGGACTTCTCCTTCTGCAGAAGAAGAAGAAGATGCTTATTATAGCCATCATCAACAGAAGAAGCTATGTCCAAAGGATCCTTGGGGTTTGTCAATTGTGACAGCTAGTTGTGATGGGACTATAAGGACATTTCACAACTTTGGACTGCCCATTAGGCTTTAG 1872 0.4001 MLSSKNEGDIIYDDDVFFDSIHYLLPQEFSDLGSNELDYEIWVNEPQSVKERRRRFLEGMGFSGLSDMSSRTSLEPERRIRDNNNGAILNNVVEKETSEASMFDEMTMFPEEDVSFHETRHTEAEVQQRHVDLDMEQKKKKKWWERFVNKKKESGANKSHRIKVRQNKKRWKELSGLYVGQEIRAHNGIIWTMKFSSNGQYLATGGEDGVVRIWRVVLQDISSDCFNAEDSVVTKVKQDMFCSWKKQSGQRNRLVLPNKVFQIEESPMQEFYGHSSDVLDLAWSNSDILLSSSMDKTVRLWQIGCDQCLSVFRHNDYVTCIQVNPVDGDYFISGSIDGKVRIWGVHEERVVDWADIHEVITAISYKPDGKGFVVGSISGTCRFYVISDEHCRFETQIHVDGKKRSRGNKISGIQFSQERHQRALITSEDSKFCLLEGIDVVHKYRGLPRSGSQMCGSFTSGKHITSVGEDSHVYIWNSCDLQNPSPKHKKSTGFCEYFFSKGVVVAVPWSGMNTEQIVPTVLTQYCSSDLLQPQMLEDRGRGQCFSHSNWFSVDHTCRGSVTWPEEKLPPWTSPSAEEEEDAYYSHHQQKKLCPKDPWGLSIVTASCDGTIRTFHNFGLPIRL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g2123 623 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 353 IPR001680 GO:0005515
Acco04g2123 623 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 303 - -
Acco04g2123 623 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 216 IPR001680 GO:0005515
Acco04g2123 623 SUPERFAMILY WD40 repeat-like 179 613 IPR036322 GO:0005515
Acco04g2123 623 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 303 IPR001680 GO:0005515
Acco04g2123 623 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 216 - -
Acco04g2123 623 PANTHER WD REPEAT DOMAIN 44 121 620 IPR040324 -
Acco04g2123 623 SMART WD40_4 176 215 IPR001680 GO:0005515
Acco04g2123 623 SMART WD40_4 264 302 IPR001680 GO:0005515
Acco04g2123 623 SMART WD40_4 305 344 IPR001680 GO:0005515
Acco04g2123 623 SMART WD40_4 437 477 IPR001680 GO:0005515
Acco04g2123 623 SMART WD40_4 346 385 IPR001680 GO:0005515
Acco04g2123 623 Gene3D - 167 515 IPR015943 GO:0005515
Acco04g2123 623 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 311 343 - -
Acco04g2123 623 Pfam WD domain, G-beta repeat 182 214 IPR001680 GO:0005515
Acco04g2123 623 Pfam WD domain, G-beta repeat 266 301 IPR001680 GO:0005515
Acco04g2123 623 Pfam WD domain, G-beta repeat 307 343 IPR001680 GO:0005515
Acco04g2123 623 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Acco04g2123 623 PRINTS G protein beta WD-40 repeat signature 289 303 IPR020472 -
Acco04g2123 623 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g2123 Acco-ChrAcco04 37092281 37094965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g2123 178 384 Miscellaneous Gene Families AT5G08390 22.430 1.29e-07 53.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2123 04 37092281 37094965 Acco04g2123 04 37092281 37094965 ECH