Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1943 ATGGACGGTCAAGCTGAACCCTATAACATGAACACAAAAGAAGGATGGTTAACTTGTAATATTGGAGTCCAAGAACAAACTGAAACGGTCCGAGGAGTAAGCAGTATGGGCGGTCGAGGCAAGTCTCGCACTCAACGAAAGCATTTCCGGCAGAGCAGAGAGAATGTATGGAAGCGTTCAAAACCCGATCCTTCTTCTCAAGATCCTGAAACCACCGACAATCCAAATCGTCCTTGGACTCCCTTCGCCACTCAGAACTCTGCTTTTGATGAGTATTACAAAGAGCAGGGCATAGTTCAACCAGAAGATTGGGATGCTTTTGTCGCAGTTCTCAGAACTCCATTGCCTGCTAGCTTCAGAATTAACGCTTGTAGCCAGTTTTCTGCTGATCTTAGGTCGCAATTGGAGAATGATTTTGTGCAAACTCTTCAAGCTGAGGTTGTTGAAGGGGAAGATGCAGAGGCCATTAGACCTTTGGCATGGTATCCTGAGAACCTTGCTTGGCATTCCAACTTTTCCCGTATGCAGCTGAGGAAGAATCAAACGCTCGAAAGGTTCCATGAATTCTTAAAGCTAGAAAATGAAATTGGAAATATTACAAGACAGGAAGCTGTCAGCATGGTGCCTCCACTCTTCTTGAATGTGCAGCCAGATCATTTTGTGCTTGATATGTGTGCTGCACCAGGTTCAAAAACATTCCAATTGCTTGAGATTATACACCAATCAACTAAAGCTGGATCTCTTCCTGATGGAATGGTGATAGCAAATGATCTTGATGTTCAAAGATGTAATCTTCTCATCCACCAAACAAAAAGGATGTGCACAGCCAACCTCATTGTCACTAATCATGAAGCTCAGAACTTTCCAGGCTGTCGTTTAGTCAGAAATCATGAATCATTGGGAACAGAACAGCACATTAGCCAACTTTTATTTGATTGCATTCTCTGTGATGTCCCTTGCAGTGGAGATGGTACCCTTCGCAAGGCACCTGATCTTTGGAGGAAATGGAATACTGGGATGGGAAATGGGCTTCATAGCCTACAAGTTCTAATCGCTATGCGAGGCTTATCTTTACTTAAAGTTGGCGGAAGAATGGTCTATTCAACCTGCTCAATGAATCCAATTGAGAATGAAGCTGTGGTTGCAGAGGTTTTACGAAGGTGTGGAGAATCTGTTGAACTTGTAGATGTCTCAAATGAGTGCCCCCAACTTTTGCGCCGGCCAGGTCTCAAGAGATGGAAGGCATGTGACAAGGGCTTGTGGTTGTCTTCCTACAAAGATGTTCCCATGTGTCGAAGAAGTGTCTTTTTTCCCAGCATGTTTCCTTCTGGAAAAAACTATCAGGACCTTGTTGACAGTAATCAAAAGATGGACATGATAGATGATACTGATAAGGGTGTTTGTGGAAATTCTGAAGATGGCAATCAAGCAGCAGAGAATCCTGTGACAGATAAGTTAACTGATGAAGTTTCTGATTTACCGCTAGAGCGTTGCATGAGGATAGTGCCTCATGATCAGAACACTGGAGCTTTCTTTATTGCAGTGCTACAGAAGGTTTCTCCTCTTCCAGCAATTCATATTCCTGAAAAAACAAAAAATGGAATTGATAAGCAGCATGGAGAACCAGAGAACCAGGATATTGAAGATTCAAAAGTATTGCAGGTCGATTCATTAGAAAATACAAATGAGGAGGCTTTGGAAGAGGTTAATGTAATCGATAACAAACCCAACAAAGAAGATTTGGAAGCTAGTCCTTCTGGTGCATGTTTAGAAGGGGATGCAGAGGAAGTGCAAAAACCTCCCAAAACAGATAGCATAGTAAAAACGACTTCAGGGAAAAGAAAGCTGCAGATTCAAGGCAAGTGGAGAGGCGTTGATCCTGTTTTCTTCTTCAAAGATGAAGACACTATTAACAGCATAAAGGATTTTTATGGTATTGATGAAAGGTTTCCATTTAATGGTCATCTTGTAACTAGAAACCACGATGGAGGCCATGTGAAAAGAATTTACTATGTCAGCAAGTCAGTCAAAGATGTTCTTGAACTGAATTTCTCAGTTGGGCAGCAACTCAAAATAGCATCCCTTGGTCTGAAGATGTTTGAAAGACAGACGTCAAGAGAAGGAAGTTCAGCATCATGTGCTTTCCGAATATCATCTGAAGGATTGCCTCTTATTTTGCCATACATTACCAAGAGGATTCTTTGTGCATCTCCTGTAGACTTCAAGCATCTTCTGCAGTACAAAACTATAAAATTTGCAGATTTTGTTGATGCTGAGTTTGGCAAAAGGGCCGAAAACCTAACAATGGGCTATTGTGTGGTAGTTCTAAGTAAAGGGAAAAGAGAAGCATCAGAATCCATTCAGGTGGATGAGTCCACCATAGCCATTGGATGCTGGAAAGGAAGGGCCAGTTTGAATGTGATGGTAGCTGCAATGGACTGCCGAGAACTGCTTGAAAGACTTTCAGTGCGTTTTGATTCAGAAAATGGTTCCTCCATGCATGAGAACATGCCCTCCAATAATAATGCTGTTGATGAATTACAGAGCACTCACGCTGGTATTGATGCCTCAGAAGCTCCTGAAGGCGACAATAGCTAA 2598 0.423 MDGQAEPYNMNTKEGWLTCNIGVQEQTETVRGVSSMGGRGKSRTQRKHFRQSRENVWKRSKPDPSSQDPETTDNPNRPWTPFATQNSAFDEYYKEQGIVQPEDWDAFVAVLRTPLPASFRINACSQFSADLRSQLENDFVQTLQAEVVEGEDAEAIRPLAWYPENLAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLNVQPDHFVLDMCAAPGSKTFQLLEIIHQSTKAGSLPDGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQNFPGCRLVRNHESLGTEQHISQLLFDCILCDVPCSGDGTLRKAPDLWRKWNTGMGNGLHSLQVLIAMRGLSLLKVGGRMVYSTCSMNPIENEAVVAEVLRRCGESVELVDVSNECPQLLRRPGLKRWKACDKGLWLSSYKDVPMCRRSVFFPSMFPSGKNYQDLVDSNQKMDMIDDTDKGVCGNSEDGNQAAENPVTDKLTDEVSDLPLERCMRIVPHDQNTGAFFIAVLQKVSPLPAIHIPEKTKNGIDKQHGEPENQDIEDSKVLQVDSLENTNEEALEEVNVIDNKPNKEDLEASPSGACLEGDAEEVQKPPKTDSIVKTTSGKRKLQIQGKWRGVDPVFFFKDEDTINSIKDFYGIDERFPFNGHLVTRNHDGGHVKRIYYVSKSVKDVLELNFSVGQQLKIASLGLKMFERQTSREGSSASCAFRISSEGLPLILPYITKRILCASPVDFKHLLQYKTIKFADFVDAEFGKRAENLTMGYCVVVLSKGKREASESIQVDESTIAIGCWKGRASLNVMVAAMDCRELLERLSVRFDSENGSSMHENMPSNNNAVDELQSTHAGIDASEAPEGDNS 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1943 865 MobiDBLite consensus disorder prediction 28 83 - -
Acco04g1943 865 Pfam 16S rRNA methyltransferase RsmB/F 212 397 IPR001678 GO:0008168
Acco04g1943 865 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 45 837 IPR023267 GO:0001510
Acco04g1943 865 MobiDBLite consensus disorder prediction 829 865 - -
Acco04g1943 865 MobiDBLite consensus disorder prediction 829 848 - -
Acco04g1943 865 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 107 519 IPR001678 GO:0008168
Acco04g1943 865 MobiDBLite consensus disorder prediction 67 83 - -
Acco04g1943 865 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 84 426 - -
Acco04g1943 865 Coils Coil 555 575 - -
Acco04g1943 865 Gene3D Vaccinia Virus protein VP39 83 434 IPR029063 -
Acco04g1943 865 PRINTS RNA (C5-cytosine) methyltransferase signature 501 518 IPR023267 GO:0001510
Acco04g1943 865 PRINTS RNA (C5-cytosine) methyltransferase signature 362 378 IPR023267 GO:0001510
Acco04g1943 865 PRINTS RNA (C5-cytosine) methyltransferase signature 222 232 IPR023267 GO:0001510
Acco04g1943 865 PRINTS RNA (C5-cytosine) methyltransferase signature 312 324 IPR023267 GO:0001510
Acco04g1943 865 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 396 415 IPR023270 GO:0016428
Acco04g1943 865 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 690 702 IPR023270 GO:0016428
Acco04g1943 865 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 168 189 IPR023270 GO:0016428
Acco04g1943 865 MobiDBLite consensus disorder prediction 49 66 - -
Acco04g1943 865 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 78 519 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1943 Acco-ChrAcco04 33419096 33429763 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g1943 04 33419096 33429763 Acco04g1943 04 33419096 33429763 CCT
Acco04g1943 04 33419096 33429763 Acco04g1943 04 33419096 33429763 ECH