Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1893 ATGGCTGAAACCGGTATCGTCCGGTTTCCGGGCAGCTTAGACCCTCGAGCGGAAGAGTTCACGCCGAGAAATCAAACAACGCTGTACCGGCCAGTTCAACTGTTCTACCCTTGCGTGCCCACCGCCGGCGTTCAGCTTCAGCCACTGCCTCTTTGTAATACTGCAGCTCCGGTCGGTGTTCCGTATCCGCCATTCTGCTCCCCCGCAGCGTACATTGACCAACTACCTCCGTCGGCCGCGCTGTCTGTGTCTCCGTCCCCGTCTCCGTTTTCATCGTCCTCGCCCACGCGGTCTCTGCTGCTCAGCTCGGTGCCGGCGGAGGTGGTGGTGAGTGAGTCGTTGTTGCGGCGGGAATTGGAGGTGTTCGGAGATGTTAGAGGCGTTCAGATGGAGAGGGTTCGAGAAGGAATAGTGACTGTTCATTTCTACGACCTGCGAAATGCAGAGACGGCGTTAATGGCGATTCGGAGGCAGCACATGCAACACCAGACCAGGCTCCGTAATTTCTATTCCTCCGTGTTGAAGTCTCGCAATTCGGCGTTGGAACCGGACTGTTACTCCGTCACCGCCCCACTCCCACCTCCGGCGCGTGGTCTCGTCGCCGGTCGTCCGGTGTGGGCCCAGTACATTGCCCCAGCTCCCAACGCCGTCCCCCAGAGCCAGAACCAAGGCACGATCGTGATTTTCAATTTAGATTCGACGGTGTCCACAGAAACTCTCCAGCAAACTTTCGAGGCATTTGGTCCTGTGAGGGAACTAAGAGAGACACCATCAAAGAAGAATCAGAAGTTTGTGGAGTTCTTTGACGTCAGAGATGCGGCCAAGGCCTTGGAGGAGATGAACGGCAAGGAAATTAACGGCAACGTAGTCGTTATTGAGTTCAGTCGTCCCGGTGGTGGTCATGGCCGGAAGTTCTTCAACCACCACCAGACCATCTCCAAAAACGCAGTGCCTTTGAACTACCGACCCCCTTCCCCTCCTCCCTATCCACCTTCTCCTTCTACACCACTGGCCCACAAAAACGCACGTCGTTTTTCTCATCTTCCCCAGCCCCAATTGTCGTGCAGGAAAGCAGCTGGCAACAAGGGCCGTAGCGGTGGTCAAGACACGGTTTCTTTGGAAACGACGAATTTGAGTGGTGTGGAAGAGAAGCCACCGGAAGGTCCTGCTCCGAGAAACTCTACCGTGAAGAACTGTGTGGATGAGGAGGCTGCAACGGCGGCGGCGGGAAGCACGAAGCAGCAACAACAACAACCACCCAGAAGTAGGAATTGGAAGGGAAAGCAAGGGAGGAAGCTGGAAACAAGGTTTCTAATTAAGGAAGATGCGATTGTGGAATCATGTAACAAAGATTCCAGAACTACTGTCATGATCAAGAACATACCAAACAAGTACAGTCAGAAGCTACTATTGAACATGCTGGATAATCACTGCATCCACTGCAACGAGCAGATTGGCGACGGCGACGATCAACCCTTGTCCTCTTACGATTTCGTCTACCTCCCCATTGATTTCAACAACAAGTGTAACGTGGGGTATGGGTTTGTGAACATGACATCACCAGAGGCGACGATGAGGTTGTATAAAGCATTTCATCTTCAACATTGGGAAGTCTTTAACTCGAGAAAAATATGCCAGGTCACATACGCCAGGGTTCAGGGTTTGGAAGCGTTGAAAGAGCATTTCAAGAACTCCAAGTTCCCATGCGAGATAGAGCATTACTTACCGGTGGTGTTTTCTCCGCCGCGGGATGGGAGGCAGATGACGGTGCCACTTCCGATTGTGGGTCAGAAGCAGCCTGGAGAAGCCACTGATGGGGCCGCCGACTGTAAAGCAATTAATGACGATGTCGGTGGTGCGGTGGAGGATAAAAATAACACAGCTGCATCAGGCGGCTGCGAACAGAAGCAGGACGTGCAGAGCAGCAGAAAAAACGGCGGCGGGGAGGGCGATGATGATGGTGACGATGACAGAAGAAGAAATAGCGAAGGTGGAGAAGAAATGGGAAGGGATCAACACAGAATAGTTCAGTCTTCAGTGATAGATATTTGA 2052 0.5288 MAETGIVRFPGSLDPRAEEFTPRNQTTLYRPVQLFYPCVPTAGVQLQPLPLCNTAAPVGVPYPPFCSPAAYIDQLPPSAALSVSPSPSPFSSSSPTRSLLLSSVPAEVVVSESLLRRELEVFGDVRGVQMERVREGIVTVHFYDLRNAETALMAIRRQHMQHQTRLRNFYSSVLKSRNSALEPDCYSVTAPLPPPARGLVAGRPVWAQYIAPAPNAVPQSQNQGTIVIFNLDSTVSTETLQQTFEAFGPVRELRETPSKKNQKFVEFFDVRDAAKALEEMNGKEINGNVVVIEFSRPGGGHGRKFFNHHQTISKNAVPLNYRPPSPPPYPPSPSTPLAHKNARRFSHLPQPQLSCRKAAGNKGRSGGQDTVSLETTNLSGVEEKPPEGPAPRNSTVKNCVDEEAATAAAGSTKQQQQQPPRSRNWKGKQGRKLETRFLIKEDAIVESCNKDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGDGDDQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATMRLYKAFHLQHWEVFNSRKICQVTYARVQGLEALKEHFKNSKFPCEIEHYLPVVFSPPRDGRQMTVPLPIVGQKQPGEATDGAADCKAINDDVGGAVEDKNNTAASGGCEQKQDVQSSRKNGGGEGDDDGDDDRRRNSEGGEEMGRDQHRIVQSSVIDI 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1893 683 MobiDBLite consensus disorder prediction 628 644 - -
Acco04g1893 683 PANTHER RNA RECOGNITION MOTIF-CONTAINING 330 635 - -
Acco04g1893 683 FunFam Terminal EAR1-like 1 400 559 - -
Acco04g1893 683 Gene3D - 213 296 IPR012677 -
Acco04g1893 683 MobiDBLite consensus disorder prediction 316 431 - -
Acco04g1893 683 MobiDBLite consensus disorder prediction 408 424 - -
Acco04g1893 683 CDD RRM3_EAR1_like 453 554 IPR034458 -
Acco04g1893 683 MobiDBLite consensus disorder prediction 621 683 - -
Acco04g1893 683 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 290 IPR000504 GO:0003723
Acco04g1893 683 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 173 IPR000504 GO:0003723
Acco04g1893 683 MobiDBLite consensus disorder prediction 365 379 - -
Acco04g1893 683 MobiDBLite consensus disorder prediction 645 673 - -
Acco04g1893 683 SUPERFAMILY RNA-binding domain, RBD 224 532 IPR035979 GO:0003676
Acco04g1893 683 SUPERFAMILY RNA-binding domain, RBD 85 159 IPR035979 GO:0003676
Acco04g1893 683 SMART rrm1_1 225 293 IPR000504 GO:0003723
Acco04g1893 683 SMART rrm1_1 98 167 IPR000504 GO:0003723
Acco04g1893 683 Gene3D - 397 559 IPR012677 -
Acco04g1893 683 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 297 IPR000504 GO:0003723
Acco04g1893 683 MobiDBLite consensus disorder prediction 320 335 - -
Acco04g1893 683 Pfam RNA recognition motif 2 453 563 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1893 Acco-ChrAcco04 31841549 31844398 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g1893 04 31841549 31844398 Acco04g1893 04 31841549 31844398 ECH