Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g1710 ATGAGCTGGACTGGAGGAGATTGGATGTGTGGAGCTTGCCAGCACATAAATTTCAAGAAAAGAGATGCGTGCCAGCGTTGTGGGTACCCTAAATTCGGTGGTCCTGACCCTTCAACCTATGGATACAATAATAGAACTCAAGATCAGGCTTTAGCAGGGGACTGGATTTGCCCTGCCATGAATTGCGGGGCCCACAACTACGCGAGCCGATCTAGCTGCTACCGTTGCGGCGCAACCAAGAATAATCATGTTTCTCTGTATGGCGGAAACATGGTGGTGGGTTCTGATGGATATGGATCAGATTGTAGTTTCCCTCCAGGATGGAAGGCTGGTGATTGGATTTGCAATAGATATGGCTGTGGAGTGCATAATTATGCTAGCAGGACGGAATGCTTCAAATGCAAAACGCCAAGAGATTTTGGTGAGCAAAAGTTTGGCTTTCTTGGATTTTTCTCTTTTTTTCTTATGAAAATATCTTAG 480 0.4562 MSWTGGDWMCGACQHINFKKRDACQRCGYPKFGGPDPSTYGYNNRTQDQALAGDWICPAMNCGAHNYASRSSCYRCGATKNNHVSLYGGNMVVGSDGYGSDCSFPPGWKAGDWICNRYGCGVHNYASRTECFKCKTPRDFGEQKFGFLGFFSFFLMKIS 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g1710 159 ProSiteProfiles Zinc finger RanBP2 type profile. 51 82 IPR001876 -
Acco04g1710 159 Pfam Zn-finger in Ran binding protein and others 6 31 IPR001876 -
Acco04g1710 159 Pfam Zn-finger in Ran binding protein and others 52 80 IPR001876 -
Acco04g1710 159 Pfam Zn-finger in Ran binding protein and others 109 138 IPR001876 -
Acco04g1710 159 ProSiteProfiles Zinc finger RanBP2 type profile. 109 140 IPR001876 -
Acco04g1710 159 Gene3D - 44 82 - -
Acco04g1710 159 Gene3D - 1 35 - -
Acco04g1710 159 Gene3D - 105 140 - -
Acco04g1710 159 SUPERFAMILY Ran binding protein zinc finger-like 3 34 IPR036443 -
Acco04g1710 159 SMART zf_4 111 137 IPR001876 -
Acco04g1710 159 SMART zf_4 53 79 IPR001876 -
Acco04g1710 159 SMART zf_4 6 30 IPR001876 -
Acco04g1710 159 PANTHER ZINC FINGER PROTEIN 52 142 - -
Acco04g1710 159 ProSitePatterns Zinc finger RanBP2-type signature. 55 76 IPR001876 -
Acco04g1710 159 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Acco04g1710 159 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Acco04g1710 159 SUPERFAMILY Ran binding protein zinc finger-like 106 140 IPR036443 -
Acco04g1710 159 ProSitePatterns Zinc finger RanBP2-type signature. 113 134 IPR001876 -
Acco04g1710 159 SUPERFAMILY Ran binding protein zinc finger-like 47 83 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g1710 Acco-ChrAcco04 23536879 23538261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g1710 6 76 EF-hand Containing Proteins AT1G55040 30.986 1.09e-06 45.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco13g0897 13 6894294 6895451 Acco04g1710 04 23536879 23538261 CCT