Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco04g0839 ATGGCAACTGGACAACTGTTCTCCGGTACCACACAAGCATTATTTTACAACTACAAGCAACTTCCTATCCAACGGATGCTTGATTTTGACTTCCTATGTGGTTTGTACCAATTCTCTTCATCTTCTAGTATGTTTTCTATTGTATTCCTTGGGAGTGGACAGACTGCAGTAAACTGGACAATTGCATATTGTTTGTTCTTATTTTTAATAAAGGCGCCATTTTATCTTATAGGTAGGGAGACGCCATCTGTTGCTGGAATCATTAATCCTGGTTCTGAGGGATTTCAGAAGCTCTTTTTTGGTCAAGATGAAATTGCAATCCCAGTGCATTCTACCATTGAAGCAGCTTGTGCTGCACATCCTACTGCTGATGTCTTCATCAATTTTGCATCATTTAGGAGTGCTGCTGCTTCATCCATGGCTGCATTGAAGCAGCCAACAATTAGAGTTGTTGCTATTATTGCTGAAGGTGTACCTGAGTCTGACACCAAGCATTTGATTGCATATGCCCGGTCAAACAATAAGGTTGTTATCGGGCCAGCCACTGTTGGAGGTATTCAAGCCGGTGCTTTTAAGATAGGTGACACAGCTGGAACAATTGACAATATTATTCAATGCAAGCTGTACAGGCCTGGATCTGTTGGTTTTGTTTCTAAATCTGGTGGGATGTCCAACGAATTGTACAACAGCATTGCTCGGGTAACGGATGGAATTTATGAAGGCATTGCGATTGGAGGAGATGTTTTTCCTGGTTCTACTCTTTCTGATCATATTTTGCGGTATAACAACATACCCCAGGTTAAAATGGTGGTAGTACTTGGGGAATTGGGTGGACGAGATGAGTATTCTCTAGTGGAAGCCCTAAAACATGGGAAAGTGACAAAACCGGTTGTTGCCTGGGTCAGTGGAACCTGTGCACGGCTCTTCAAGTCTGAAGTACAATTTGGTCATGCTGGAGCTAAAAGTGGTGGTGAAATGGAGTCTGCTCAAGCAAAGAATCAAGCACTTAGAGAAGCTGGAGCTATTGTTCCCACTTCATATGAAGCTCTTGAAGCTGCAATTAAGGAAACATTTGACAAATTGGTAAAAGAAGGAAAAATCACTCCAGTGAAGGAGTTTACTCCTCCAGAGATTCCTGAGGACCTTAATTCTGCCATTAGGAACGGAAAAGTCCGTGCTCCAACTCATATTATTTCCACCATCTCTGATGATAGAGGCATGTTGGGATCCATCATTCATTACTTCTGTGAGGAGCCATGCTATGCTGGTGTTCCCATGTCTAACATTATTGAAAAAGGTTTGGGTGTAGGTGATGTTATATCTCTCCTGTGGTTTAAACGCAGCCTTCCTCGTTATTGCACAAAATTTATCGAGATATGCATCATGCTATGTGCCGACCATGGTCCTTGCGTCTCTGGTGCTCACAATGCTATAGTGACAGCGAGGGCAGGGAAGGACGTTGTCTCCAGCCTGGTATCAGGTTTGCTTACAATTGGTCCTCGATTTGGTGGTGCCATTGATGATGCTGCTCGTTACTTCAAGGATGCTTATGACAGGAATCTTACACCTTACGAATATGTTGAAGGCATGAAGAAGAAAGGCATCCGTGTGCCAGGAATAGGGCACAGGATCAAGAGCAGAGACAACAGAGATAAGAGAGTAGAGTTGCTACAGAAGTTTGCAAACACCCATTTTCCTTCTGTAAAATACATGGAATATGCCGTTAAGGTTGAAAACTACACCCTTACAAAGGCAAATAACCTGGTTCTCAACGTAGATGGTGCAATTGGGTCCCTTTTCTTGGATCTTCTTTCTGGCAGTGGGATGTTCACCAAGCAAGAGATCGATGAAATAGTCGAGATTGGCTATCTGAATGGGCTATTTGTTCTGGCTCGCTCCATTGGCCTCATTGGGCATACCTTTGACCAGAAGAGATTGAAACAACCACTGTATCGCCACCCATGGGAGGATGTTCTCTACGCGAAGTGA 1989 0.4344 MATGQLFSGTTQALFYNYKQLPIQRMLDFDFLCGLYQFSSSSSMFSIVFLGSGQTAVNWTIAYCLFLFLIKAPFYLIGRETPSVAGIINPGSEGFQKLFFGQDEIAIPVHSTIEAACAAHPTADVFINFASFRSAAASSMAALKQPTIRVVAIIAEGVPESDTKHLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMSNELYNSIARVTDGIYEGIAIGGDVFPGSTLSDHILRYNNIPQVKMVVVLGELGGRDEYSLVEALKHGKVTKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALREAGAIVPTSYEALEAAIKETFDKLVKEGKITPVKEFTPPEIPEDLNSAIRNGKVRAPTHIISTISDDRGMLGSIIHYFCEEPCYAGVPMSNIIEKGLGVGDVISLLWFKRSLPRYCTKFIEICIMLCADHGPCVSGAHNAIVTARAGKDVVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRNLTPYEYVEGMKKKGIRVPGIGHRIKSRDNRDKRVELLQKFANTHFPSVKYMEYAVKVENYTLTKANNLVLNVDGAIGSLFLDLLSGSGMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYAK 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco04g0839 662 PANTHER ATP-CITRATE SYNTHASE 75 661 IPR002020 GO:0006099|GO:0046912
Acco04g0839 662 FunFam ATP-citrate synthase subunit 1 509 602 - -
Acco04g0839 662 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 303 319 IPR017440 -
Acco04g0839 662 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 218 247 IPR033847 -
Acco04g0839 662 Gene3D - 72 181 - -
Acco04g0839 662 CDD CCL_ACL-C 423 660 - -
Acco04g0839 662 Gene3D - 504 601 IPR016143 -
Acco04g0839 662 Pfam Citrate synthase, C-terminal domain 442 652 IPR002020 GO:0006099|GO:0046912
Acco04g0839 662 SUPERFAMILY Citrate synthase 178 659 IPR036969 GO:0046912
Acco04g0839 662 FunFam ATP-citrate synthase subunit 182 367 - -
Acco04g0839 662 Gene3D - 182 367 IPR016102 -
Acco04g0839 662 Pfam CoA-ligase 218 342 IPR005811 GO:0003824
Acco04g0839 662 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 77 180 IPR036291 -
Acco04g0839 662 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 212 237 IPR017866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco04g0839 Acco-ChrAcco04 7409479 7414069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco04g0839 1 662 Acyl Lipid Metabolism Gene Families AT3G06650 84.743 0.0 1104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g0839 04 7409479 7414069 Acco04g0839 04 7409479 7414069 ECH